PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g116890.2.1
Common NameLOC101246812
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 351aa    MW: 39182.5 Da    PI: 8.9864
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g116890.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-29171231160
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                         ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+k
  Solyc03g116890.2.1 171 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHSK 231
                         58***************************99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28165231IPR003657WRKY domain
PROSITE profilePS5081124.925166232IPR003657WRKY domain
SuperFamilySSF1182901.83E-24168230IPR003657WRKY domain
SMARTSM007742.0E-33171231IPR003657WRKY domain
PfamPF031068.2E-24172229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEFTSLVDTS LDLNFRPLRV SDELPKQEVE SNFIGLGRDL VPVKDEASNL IEELNRVNAE  60
NKKLTEMLTV MCQNYNSLRN QLTEYMSKQN SSTSGADQDQ NSDGSKKIKI ENNNNNNNNN  120
EIVKSSVQVL NSESSSSDED SSTKKPREEH IKTKTSRVYM RTEPSDTSLI VKDGYQWRKY  180
GQKVTRDNPS PRAYFKCSFA PTCPVKKKVQ RSVEDQSILV ATYEGEHNHS KVDTAGPVTT  240
TSPSSRFNPK NNTYAAAVMP RQTLTLDLAE PKTLQNDIKK VHSITSTSSA SGQKRKSPGT  300
DQQQQNRPEF QHFLIEQMAS SLTKDPSFQA ALAAAISGKF LQNNSNTKDK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-191702291371WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.113620.0callus| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g116890.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6542910.0Solanum lycopersicum JA-induced WRKY protein mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303844.10.0probable WRKY transcription factor 40
TrEMBLA0A3Q7GHS30.0A0A3Q7GHS3_SOLLC; Uncharacterized protein
STRINGSolyc03g116890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-82WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]