PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g115440.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 441aa MW: 49606.4 Da PI: 4.3641

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g115440.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3.1e-07	180	227	3	47
SS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+el+ ++v + lG++ W+ a +++ R +++++s+++++ Solyc03g115440.1.1 180 KWSEEEEELFHEVVlsnpASLGNNFWNHLAVEFP-SRRREELVSYYFNV 227 8***********4444456777******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0021	177	230	IPR001005	SANT/Myb domain

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MGTHGSASNS SWPTSSTSEE DNRPEAPFHR LTSPEYYYFD HLFRAAAHHR EIYSSLSSNP 60 QKMVPIGPDF QAELPEWTPY SNKDKPCIEG IHETVSSPSQ ANENKLAGRT IIPMPKMELL 120 ADQVENIGER RVECSCEDKD SIRCVQLDVI EAREKLKLAL GEETFVRLGF CDMGEVVAEK 180 WSEEEEELFH EVVLSNPASL GNNFWNHLAV EFPSRRREEL VSYYFNVFIL RKRAEQNRFD 240 PLNIDSDNDE WHDAVDDADE AAKMTDEDED SVVESPAHHN GLSYNMIHEE RDRRTYDEDA 300 HEAICEDYKP VNFGSRKVFT DVQESCPSKF FDSNNSFKVG MQPQDQGLSS KVVESCTTDA 360 AGVTSESSLG KTNNDNHWAS DIAGMGSGTK HDSLLESCNG KEWDGGYLNC ARNEVGLVPT 420 PTMIEEVFGD GAWIYKSRDG *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MGTHGSASNS SWPTSSTSEE DNRPEAPFHR LTSPEYYYFD HLFRAAAHHR EIYSSLSSNP  60
QKMVPIGPDF QAELPEWTPY SNKDKPCIEG IHETVSSPSQ ANENKLAGRT IIPMPKMELL  120
ADQVENIGER RVECSCEDKD SIRCVQLDVI EAREKLKLAL GEETFVRLGF CDMGEVVAEK  180
WSEEEEELFH EVVLSNPASL GNNFWNHLAV EFPSRRREEL VSYYFNVFIL RKRAEQNRFD  240
PLNIDSDNDE WHDAVDDADE AAKMTDEDED SVVESPAHHN GLSYNMIHEE RDRRTYDEDA  300
HEAICEDYKP VNFGSRKVFT DVQESCPSKF FDSNNSFKVG MQPQDQGLSS KVVESCTTDA  360
AGVTSESSLG KTNNDNHWAS DIAGMGSGTK HDSLLESCNG KEWDGGYLNC ARNEVGLVPT  420
PTMIEEVFGD GAWIYKSRDG *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8746	0.0	callus\| cell culture\| flower\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g115440.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238568	0.0	Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010318838.1	0.0	uncharacterized protein LOC101262606
Refseq	XP_025885898.1	0.0	uncharacterized protein LOC101262606
TrEMBL	A0A0V0ILJ4	0.0	A0A0V0ILJ4_SOLCH; Putative ovule protein
STRING	Solyc03g115440.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25
Representative plant	OGRP2947	4	5

Link Out ? help Back to Top
Phytozome	Solyc03g115440.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]