PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g115010.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 342aa    MW: 38662 Da    PI: 5.8463
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g115010.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.78.9e-30531733112
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssas 83 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ k  i+ l+ +          +++s++e+++++ +  ++
  Solyc03g115010.1.1  53 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEATKLDIDTLPPLpvppeyftrfQQPSHEEFSDVRAQWLNA 143
                         78*************************************************************4444444444333333333334433333 PP

                 TCP  84 nsssgkaaksaa.kskksqksaasalnlak 112
                         n s  ++ +++   s+++++++ ++  l +
  Solyc03g115010.1.1 144 NTSYLEHGRNKSiASNEESNQEDNMFTLGN 173
                         333333333333355555555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.67454112IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-2654162IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNSSSGNNFE TKQESNNDSR LASKTTSAPP SSTSRQWGAN KNPRIVRVSR TFGGKDRHSK  60
VCTIRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLEATKLDID TLPPLPVPPE  120
YFTRFQQPSH EEFSDVRAQW LNANTSYLEH GRNKSIASNE ESNQEDNMFT LGNQRSSNLP  180
GMPFNSYNYQ WDHQPNSNLS LGHFGHNHSF SSQIDDDQSH QNTSFPLSLG SSSSPFPSSS  240
QLYFNPITTT FQPIVPSPNY ITNHHPIESH DPRANMNHFN FLSSTTSHNN QLVMPTLNLI  300
SSQMKPFSLN NDPRWMSSRD DEDDDDDDDD DDNQPHEGRA I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1759113155Putative transcription factor PCF6
5zkt_B2e-1759113155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.258400.0flower| trichome
Function -- GeneRIF ? help Back to Top
  1. A clear negative correlation was observed between miR319 and its target TEOSINTE BRANCHED1/CYCLOIDEA/PRO-LIFERATING CELL FACTOR 4 (TCP4) in leaf, stem, and root under root-knot nematode stress.
    [PMID: 26002970]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g115010.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
BioGRIDSolyc03g115010.1, Solyc06g069460.1, Solyc05g007420.1, Solyc02g089020.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384460.0Solanum lycopersicum chromosome 3 clone C03HBa0051C24, complete sequence
GenBankAC2384690.0Solanum lycopersicum chromosome 3 clone C03HBa0291G05, complete sequence
GenBankEU1247390.0Solanum lycopersicum chromosome 3 clone C03HBa0233O20, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234564.20.0TCP transcription factor 4
TrEMBLG3BGU40.0G3BGU4_SOLLC; TCP transcription factor 4
STRINGSolyc03g115010.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-45plastid transcription factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Parapunova V, et al.
    Identification, cloning and characterization of the tomato TCP transcription factor family.
    BMC Plant Biol., 2014. 14: p. 157
    [PMID:24903607]
  3. Zhao W, et al.
    Identification of jasmonic acid-associated microRNAs and characterization of the regulatory roles of the miR319/TCP4 module under root-knot nematode stress in tomato.
    J. Exp. Bot., 2015. 66(15): p. 4653-67
    [PMID:26002970]