PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g114850.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SBP | ||||||||
Protein Properties | Length: 266aa MW: 29468.4 Da PI: 9.8352 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.8 | 1.3e-42 | 167 | 242 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC +dls +k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+ Solyc03g114850.2.1 167 CQVQGCGKDLSPCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPP 242 **************************************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-34 | 161 | 228 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.701 | 164 | 241 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-39 | 165 | 244 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.2E-32 | 167 | 240 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MESWSYFSGG KGFVSEESVS VNDGMRRVKN GVMGWELKTQ SSYGMCTTDN QGFHELGSPN 60 LMRKPMFTDQ MRDGFASSKH WGGGGGSIVG AFSGEDKSSS KLSSSAVDSI SRDSSLIDLK 120 LGRFPDHHVD GNIFKSAKTL SSSTSAESIL PAKRMRAGGL NSHKPFCQVQ GCGKDLSPCK 180 DYHKRHKVCE VHSKTAKVIV NGIEQRFCQQ CSRFHLLAEF DDGKRSCRKR LAGHNERRRK 240 PPHTGMYQIS WNFFCNVTLC MPRHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-30 | 166 | 240 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.2091 | 0.0 | flower| fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g114850.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013457 | 0.0 | Lycopersicon esculentum clone 132113R, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001334260.1 | 1e-180 | squamosa promoter-binding-like protein | ||||
TrEMBL | A0A3Q7FQM4 | 1e-179 | A0A3Q7FQM4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g114850.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-47 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g114850.2.1 |
Publications ? help Back to Top | |||
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