PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc03g113530.2.1 | ||||||||
Common Name | LOC101250007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 356aa MW: 39641.1 Da PI: 6.3109 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.7 | 2.4e-12 | 72 | 113 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+el++++++ G++ W+ Ia+ + gRt++++k+ w++ Solyc03g113530.2.1 72 SFTPQEEELIIKLHATIGSR-WSIIAQQLA-GRTDNDVKNLWNT 113 79******************.*********.**********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.344 | 31 | 64 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-9 | 31 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.07E-17 | 55 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.255 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-10 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-11 | 72 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.33E-8 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 72 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 356 aa Download sequence Send to blast |
MGRPPCCNDK VHNRKCNWIE EDANTSTFVS INKHGIGNWA TMSKKSGHGR CGGRNQKQRW 60 NNRLKPDLKQ DSFTPQEEEL IIKLHATIGS RWSIIAQQLA GRTDNDVKNL WNTKLKKKLS 120 AMGIDPVTHK PFSQILTDYG NIGGFPKART RFVSLNRELK GAFMSRPEQL QHSLQNFQNF 180 NSLCVKLPKT EASEECFFSN NQDSSNINQP PVDLFSELQA IKFVTEASNY NSPKAVFSHN 240 PNPITDCSTS SPLSSSSSSS ASHSLADNQV NWCDYLLDDE FLPSNFKAQE DTLTIEEKLV 300 CGGAEDGSNN VPSTKDFENS LSTKGTSSSS FVEAMLECEN DMFLNFPGLS EDPFY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-17 | 18 | 119 | 10 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc03g113530.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236519.1 | 0.0 | transcription factor MYB35 | ||||
TrEMBL | A0A3Q7GFI4 | 0.0 | A0A3Q7GFI4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g113530.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12348 | 19 | 22 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28470.1 | 4e-45 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc03g113530.2.1 |
Entrez Gene | 101250007 |
Publications ? help Back to Top | |||
---|---|---|---|
|