PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g113120.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 525aa    MW: 58168.3 Da    PI: 7.081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g113120.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.82.9e-30235294159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+Hnh+
  Solyc03g113120.2.1 235 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCIQDMSILITTYEGTHNHP 294
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-31221296IPR003657WRKY domain
SuperFamilySSF1182902.88E-27227296IPR003657WRKY domain
PROSITE profilePS5081128.242230296IPR003657WRKY domain
SMARTSM007741.5E-36235295IPR003657WRKY domain
PfamPF031067.6E-27236294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
METVFRKSTH GGVVKQDIKI KASEEGFVED INDLKVEKER KSIHNEDDNS KSSQQKDLTG  60
DKKDDQLESA KADMEEVMEE NQRLKKHLDK IMKDYRNLQM QFHEVAQRDA EKTNTDVKHD  120
EAELVSLSLG RTSSDTKKEL SKLILSKKEN DEKEEDNLTL ALDCKFQSST KSSPSNLSPE  180
NSLGEVKDDE KGTDQTWPPH KVLKTIRNEE DDVTQQNPTK RAKVSVRVRC DTPTMNDGCQ  240
WRKYGQKIAK GNPCPRAYYR CTVAPNCPVR KQVQRCIQDM SILITTYEGT HNHPLPHSAT  300
SMAFTTSAAA SMLLSGSSSS GSGPTSSTAS ATTSALNYCF SDNSKPNPFY NLPHSSISSS  360
SHSQYPTITL DLTSNSSTSS FPGQNYRTIA NSNNYPPRYN NNNSSTNILN FSSFESNHLL  420
PMSWSNRNNQ DTHSQSYLQN NIKSAASTQT LLPQDTIAAA TKAITSDPKF QSALAVALTS  480
IIGSRSGNHH IDEKSGQNMK VTEPFPVLCS FPSTSPGDHK DYTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-202352961474WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.134390.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g113120.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0174210.0Solanum lycopersicum WRKY72 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234802.20.0WRKY transcription factor 72a
SwissprotA0A3Q7GFB50.0WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLM1BJA00.0M1BJA0_SOLTU; Uncharacterized protein
STRINGSolyc03g113120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-59WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]