PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g112930.2.1

Common Name

LOC101253882

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 334aa MW: 36690.7 Da PI: 6.8657

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g112930.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8e-40	61	121	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++++kcprCdst+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s Solyc03g112930.2.1 61 HDHSIKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 121 57889*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	55	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-33	63	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.966	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010067	Biological Process	procambium histogenesis
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGITSLQVCM DSSDWLQGTI HEDCAGGMDS SSSPSGGDHI NNLMTCSRPI IVDQRRLRPP 60 HDHSIKCPRC DSTHTKFCYY NNYSLTQPRY FCKTCRRYWT KGGTLRNIPV GGGCRKNKKV 120 SSKKSSTNTN ESIPLSTTTT TNNNNIPEMP FPHHFMSSTN FGHHGNFMLE NQAPIIDFME 180 SKYEALVGSS SSTTTNSRLL NQDLFLGNGD NNNNIGMMMM SGSTSTNGFG HDHDNIVATN 240 YPFGITSIMD SSNNGNSFGM LLPYENHHEE VQNINAVEMK PNPKILSLEW HDDQLGSNKE 300 SSFGYYSGNG GLGSWTGLMN GNCYGSSATN PLV*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00580	DAP	Transfer from AT5G62940	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g112930.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004236531.1	0.0	dof zinc finger protein DOF5.6-like
TrEMBL	A0A3Q7FPN2	0.0	A0A3Q7FPN2_SOLLC; Uncharacterized protein
STRING	Solyc03g112930.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4895	22	40
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	9e-44	Dof family protein

Link Out ? help Back to Top
Phytozome	Solyc03g112930.2.1
Entrez Gene	101253882

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]