PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g112390.2.1 | ||||||||
Common Name | LOC101264810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 37140.3 Da PI: 6.6003 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++ +G g+W+++++ g+ R++k+c++rw +yl Solyc03g112390.2.1 14 KGLWSPEEDEKLSNYITNFGIGSWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.5e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ Solyc03g112390.2.1 67 RGMFSQDEEDKIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.23 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.86E-8 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.611 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.51E-9 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MGRHSCSVKQ KLRKGLWSPE EDEKLSNYIT NFGIGSWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQDEEDKIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLMKQG 120 IDPNTHKPLK ENQIIKDEEN CTNKTSMLQI PPHLNEMGNG QFTDSKQVFD LLFVHDFQSN 180 TNPREYNSQV LAQYHDHQGE FENHQNYVFC SGSSVTKLEH VQMTETDFGS SSTSRMSSSN 240 SSNMCSNQNT AGIQINGMSE NSEALSWDIE NKMESLFQYP YIGIKNEESK SSPSQERDQL 300 YGNTTSGDFM SNYPLSSLTE EFKWG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g112390.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244804 | 5e-16 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-74b18 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236253.1 | 0.0 | myb-related protein 315-like isoform X1 | ||||
TrEMBL | A0A3Q7FS33 | 0.0 | A0A3Q7FS33_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g112390.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-77 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g112390.2.1 |
Entrez Gene | 101264810 |
Publications ? help Back to Top | |||
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