PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g111410.2.1
Common NameLOC101259526
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 344aa    MW: 38855.4 Da    PI: 8.2509
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g111410.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-14371151498
                         T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         + l++p +fa++   ++   +k   ++d sg +W v++  + ++g   +++GW eF++ ++L +gD +vF++++r+ f  +v++f+
  Solyc03g111410.2.1  37 QVLIVPPNFARSAsHLV---DKVTLVKDASGLRWPVTV--CDYQGLLAIQQGWPEFASKHDLVVGDHLVFHYTQRQHF--TVQIFD 115
                         45899*****9995333...33456699**********..****99**************************999999..999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-1721118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1922118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-1324115No hitNo description
SMARTSM010191.9E-726117IPR003340B3 DNA binding domain
PfamPF023626.9E-1228115IPR003340B3 DNA binding domain
PROSITE profilePS5086311.54739117IPR003340B3 DNA binding domain
CDDcd100173.30E-6254341No hitNo description
SuperFamilySSF1019364.12E-7269335IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-5273337IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.754276343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MESANVACDK CKKDCLLIHR KRVPSFYKAM TDKSCFQVLI VPPNFARSAS HLVDKVTLVK  60
DASGLRWPVT VCDYQGLLAI QQGWPEFASK HDLVVGDHLV FHYTQRQHFT VQIFDMNGYE  120
KIIFCCDTDK GEKRAATRVE ETTRAGDAQF DQDGRLCLHQ SRFEMPASKP PAEGLLPLRE  180
DGIKATGMVS RPAEDILLLG PKDKKCKKAS QFDSGEEEAN GNGKVNKSES AGLGDTPSFP  240
ANNYSSLVEI YGPDFLELPG SWRDLLQRPT RERWIIFLRG PDKRIWPTYY TSLLPPYYSR  300
RPSVDVLSRG WKEVAAAYGM NAKDHCLFEL ADKQNRIFDI RKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g111410.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319048.10.0uncharacterized protein LOC101263102
RefseqXP_025885819.10.0uncharacterized protein LOC101263102
RefseqXP_025885820.10.0uncharacterized protein LOC101263102
RefseqXP_025885821.10.0uncharacterized protein LOC101263102
RefseqXP_025885822.10.0uncharacterized protein LOC101263102
TrEMBLA0A3Q7FNT90.0A0A3Q7FNT9_SOLLC; Uncharacterized protein
STRINGSolyc03g111410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2081933
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.17e-10B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]