PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g110950.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 531aa    MW: 59220.7 Da    PI: 6.8233
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g110950.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.44.5e-1161575291374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevs 88 
                         lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++L+ rla  +  +++  +++ + ++++   +++  al+l++e++
  Solyc03g110950.1.1 157 LVQLLITCAEAVACRDKSRASVLLSELRASALVFGTSFQRVASCFMQGLSDRLALvQPLGTVGYVATPAMNKTDiaLEKKEEALRLLYEIC 247
                         689**************************************************9843334554555555554446688899999******* PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgv 174
                         P ++f+h++aN  Ilea+ege+ +H++D+++s    +G QW  L q+L +Rp++pp +lRiT+vg+    + e+l+ +g+ L+++A++lg+
  Solyc03g110950.1.1 248 PHIQFGHFVANCLILEAFEGESFIHVVDLGMSlglpHGHQWRRLVQSLVNRPGQPPrRLRITAVGQ----NIEKLQIIGDELEDYARSLGI 334
                         ****************************99874444678*************877779********....99******************* PP

                GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                         ++ef++ v+++le+l++++++v  gE+l+Vn++lqlh +++es    +   +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yys
  Solyc03g110950.1.1 335 NLEFSA-VESNLENLKPKDIKVYDGEVLVVNSILQLHCVVKESRGALN---SVLQVVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYS 421
                         ******.79*******************************88877777...8*************************************** PP

                GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                         a+fdsl++ lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  +++qak  l+kv+  +g+++ ee+
  Solyc03g110950.1.1 422 AIFDSLDVMLPKYDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MVSQAKQWLAKVNgHEGFTITEEK 510
                         ***************************************************************96..79********************** PP

                GRAS 356 gslvlgWkdrpLvsvSaWr 374
                         g+lvlgWk++p+v++S+W+
  Solyc03g110950.1.1 511 GCLVLGWKSKPIVAASCWK 529
                         ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.961131510IPR005202Transcription factor GRAS
PfamPF035141.6E-113157529IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MIHDMANVFL SLEPCNGDQI GYDPMENSLY LTHHKELSYS LNPYTSVLKR NAPTNNMIIS  60
SLSNDSASFK RLRRTPSLGE SFGSNTTFYS TESSSTGGSL PRIGSSNSVN SLSLQPGIHF  120
RDHVWALNQR YLAAEAFEEA AADIINQEEE NGEGMKLVQL LITCAEAVAC RDKSRASVLL  180
SELRASALVF GTSFQRVASC FMQGLSDRLA LVQPLGTVGY VATPAMNKTD IALEKKEEAL  240
RLLYEICPHI QFGHFVANCL ILEAFEGESF IHVVDLGMSL GLPHGHQWRR LVQSLVNRPG  300
QPPRRLRITA VGQNIEKLQI IGDELEDYAR SLGINLEFSA VESNLENLKP KDIKVYDGEV  360
LVVNSILQLH CVVKESRGAL NSVLQVVHEL SPKILVLVEQ DSSHNGPFFL GRFMEALHYY  420
SAIFDSLDVM LPKYDTRRAK IEQFYFAEEI KNIVSCEGPA RVERHERVDQ WRRRMSRAGF  480
QAAPIKMVSQ AKQWLAKVNG HEGFTITEEK GCLVLGWKSK PIVAASCWKC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-631455286377Protein SCARECROW
5b3h_D2e-631455286377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g110950.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068956.20.0DELLA protein RGL1-like
TrEMBLA0A3Q7GDS20.0A0A3Q7GDS2_SOLLC; Uncharacterized protein
STRINGSolyc03g110950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Representative plantOGRP70521119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-77GRAS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]