PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g104810.2.1
Common NameLOC101246903
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 487aa    MW: 53900.3 Da    PI: 7.2849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g104810.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31214270259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vk se+prsYY+Ct+ +C vkkkvers  d++++eitY+g+Hnhe
  Solyc03g104810.2.1 214 SDGYNWRKYGQKMVKASECPRSYYKCTHLKCLVKKKVERSI-DGHITEITYKGHHNHE 270
                         7****************************************.***************7 PP
2WRKY105.52.8e-33384442159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg++WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver++ dpk+v++tYeg+Hnh+
  Solyc03g104810.2.1 384 LDDGFKWRKYGQKMVKGNHHPRSYYRCTYPGCNVRKHVERASADPKAVITTYEGKHNHD 442
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.825208272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-27208272IPR003657WRKY domain
SuperFamilySSF1182907.59E-25212272IPR003657WRKY domain
SMARTSM007743.2E-34213271IPR003657WRKY domain
PfamPF031065.4E-23215270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-36370444IPR003657WRKY domain
SuperFamilySSF1182901.31E-29376444IPR003657WRKY domain
PROSITE profilePS5081135.668379444IPR003657WRKY domain
SMARTSM007743.3E-40384443IPR003657WRKY domain
PfamPF031066.1E-26385442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MGENFKAPSV SVSSLSTLTI PPKDSFFGGG NMPYFSPGPM TLVSTFFSES EYPSFSQLLA  60
GAMASPLAKP PTLFPGEEEN CKQGYKQNRP MNLMVAQSPF FTIPTAFTPS GLLNSPGFLS  120
AVQSPFGMSH QQALAHVTAQ AALSQSYLQT QAECHFPSQS KSVQVLGASD PEESSLQPQL  180
DTMSSDQKSK KFELPQLSQS EDKPSFNSVD RPASDGYNWR KYGQKMVKAS ECPRSYYKCT  240
HLKCLVKKKV ERSIDGHITE ITYKGHHNHE LPQPNKRRRD SCAQDGSDCS NINPETGTHT  300
ELEINGLNGA LVAHSEQVST EMACERSVSN ECEDAETAAS KEHDDEPNVK RMKTTVETPI  360
LSSSHKAEPE SKIVVQTRSE VDILDDGFKW RKYGQKMVKG NHHPRSYYRC TYPGCNVRKH  420
VERASADPKA VITTYEGKHN HDIPIARNRS HSTAQNSSRQ LNEQEIATWR PAILEKVALH  480
TSEIQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37215444877Probable WRKY transcription factor 4
2lex_A9e-37215444877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.86080.0flower| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g104810.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154777e-44Solanum lycopersicum chromosome 2 clone C02SLm0042B19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235494.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-124WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A3Q7FR360.0A0A3Q7FR36_SOLLC; Uncharacterized protein
STRINGSolyc03g104810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-123WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]