PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g096350.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 274aa    MW: 31417.1 Da    PI: 7.7155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g096350.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08652246
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          WT+eE +++  a++ +  +   +W ++a+ ++ g++  ++++ +  
  Solyc03g096350.2.1  6 REWTKEENKQFESAIAIYDEKtpdRWFKVAALIP-GKSVIDVINQYKE 52
                        68********************************.********99975 PP
2Myb_DNA-binding461.2e-14105149347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ +++ + +++G+g+W+ I+++m   Rt+ q+ s+ qky
  Solyc03g096350.2.1 105 PWTEEEHRRFLMGLEKYGKGDWRNISKKMVISRTPTQVASHAQKY 149
                         8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.782158IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-5254IPR009057Homeodomain-like
SMARTSM007173.1E-11456IPR001005SANT/Myb domain
SuperFamilySSF466892.87E-12561IPR009057Homeodomain-like
PfamPF002497.4E-7652IPR001005SANT/Myb domain
CDDcd001676.41E-8754No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1396156IPR009057Homeodomain-like
PROSITE profilePS5129421.3598154IPR017930Myb domain
SuperFamilySSF466891.72E-1699153IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-18101153IPR006447Myb domain, plants
SMARTSM007176.8E-13102152IPR001005SANT/Myb domain
CDDcd001672.74E-10105149No hitNo description
PfamPF002495.5E-13105149IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNKNKREWTK EENKQFESAI AIYDEKTPDR WFKVAALIPG KSVIDVINQY KELVSDVYDI  60
EAGLVPNPGY FASSITLELV DHCGLQTFRK RGSKSSDQER KKGVPWTEEE HRRFLMGLEK  120
YGKGDWRNIS KKMVISRTPT QVASHAQKYY QRQISGGKDK RRPSIHDITT VHITADSASP  180
NNLLYNINSF SKEKKLYATH NSSFQKTTTP DIVNCWNANL SNDHEDVMDF GSSFVAYPYE  240
IASQSWDEHG IDDITMNADS QLQFQSTRYQ IWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-13670973RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.226630.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g096350.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2468570.0Solanum lycopersicum strain Heinz 1706 chromosome 3 clone slm-2l14 map 3, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235257.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3Q7FM990.0A0A3Q7FM99_SOLLC; Uncharacterized protein
STRINGSolyc03g096350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.24e-82MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]