PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g093940.1.1
Common NameLOC101247304
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 218aa    MW: 25274.9 Da    PI: 9.7455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g093940.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-16956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd++l+d+v ++G  +W++ ++  g+ Rt+k+c++rw +yl
  Solyc03g093940.1.1  9 KGAWSPEEDQKLKDYVMRFGIWNWNLMPKFAGLSRTGKSCRLRWMNYL 56
                        79******************99************************97 PP

2Myb_DNA-binding47.73.5e-1562107148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ eE e+ ++  +qlG++ W++Ia +++ gRt++++k++++++l
  Solyc03g093940.1.1  62 RGPFSMEERERVIKMYQQLGNR-WAAIAGELP-GRTDNEVKNFFHTHL 107
                         89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.928156IPR017930Myb domain
SMARTSM007171.2E-12858IPR001005SANT/Myb domain
SuperFamilySSF466897.76E-298103IPR009057Homeodomain-like
PfamPF002491.3E-14956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221063IPR009057Homeodomain-like
CDDcd001672.36E-91156No hitNo description
PROSITE profilePS5129421.56357111IPR017930Myb domain
SMARTSM007174.7E-1361109IPR001005SANT/Myb domain
PfamPF002497.2E-1362107IPR001005SANT/Myb domain
CDDcd001674.20E-864107No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2464111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEDIIIIKKG AWSPEEDQKL KDYVMRFGIW NWNLMPKFAG LSRTGKSCRL RWMNYLRPDV  60
KRGPFSMEER ERVIKMYQQL GNRWAAIAGE LPGRTDNEVK NFFHTHLKKN LGQINNIDAP  120
VQCRRVKKQK KKAQEKPKLF VDISSPTMGS SSSISSIITF DQNEKIDMEK TVILESNPSL  180
SSSHSNIDGF DQFVDTTSFW LHLLNHANRE ELYYENS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2491117108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g093940.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153535e-06Solanum lycopersicum chromosome 2 clone C02HBa0011A02, complete sequence
GenBankAC2154655e-06Solanum lycopersicum chromosome 2 clone C02SLe0123B22, complete sequence
GenBankAC2158535e-06Solanum lycopersicum chromosome 2 clone C02HBa0031A13, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235435.11e-163transcription factor MYB4-like
SwissprotQ9SJX82e-45MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A3Q7GB601e-161A0A3Q7GB60_SOLLC; Uncharacterized protein
STRINGSolyc03g093940.1.11e-162(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-46myb domain protein 14
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]