PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g093940.1.1 | ||||||||
Common Name | LOC101247304 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 25274.9 Da PI: 9.7455 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+d+v ++G +W++ ++ g+ Rt+k+c++rw +yl Solyc03g093940.1.1 9 KGAWSPEEDQKLKDYVMRFGIWNWNLMPKFAGLSRTGKSCRLRWMNYL 56 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.5e-15 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e+ ++ +qlG++ W++Ia +++ gRt++++k++++++l Solyc03g093940.1.1 62 RGPFSMEERERVIKMYQQLGNR-WAAIAGELP-GRTDNEVKNFFHTHL 107 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.928 | 1 | 56 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-12 | 8 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.76E-29 | 8 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-14 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.36E-9 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 21.563 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-13 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-13 | 62 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.20E-8 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-24 | 64 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEDIIIIKKG AWSPEEDQKL KDYVMRFGIW NWNLMPKFAG LSRTGKSCRL RWMNYLRPDV 60 KRGPFSMEER ERVIKMYQQL GNRWAAIAGE LPGRTDNEVK NFFHTHLKKN LGQINNIDAP 120 VQCRRVKKQK KKAQEKPKLF VDISSPTMGS SSSISSIITF DQNEKIDMEK TVILESNPSL 180 SSSHSNIDGF DQFVDTTSFW LHLLNHANRE ELYYENS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-24 | 9 | 111 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g093940.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215353 | 5e-06 | Solanum lycopersicum chromosome 2 clone C02HBa0011A02, complete sequence | |||
GenBank | AC215465 | 5e-06 | Solanum lycopersicum chromosome 2 clone C02SLe0123B22, complete sequence | |||
GenBank | AC215853 | 5e-06 | Solanum lycopersicum chromosome 2 clone C02HBa0031A13, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235435.1 | 1e-163 | transcription factor MYB4-like | ||||
Swissprot | Q9SJX8 | 2e-45 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A3Q7GB60 | 1e-161 | A0A3Q7GB60_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g093940.1.1 | 1e-162 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-46 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g093940.1.1 |
Entrez Gene | 101247304 |
Publications ? help Back to Top | |||
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