PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g093870.1.1 | ||||||||
Common Name | LOC101246118 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 175aa MW: 19939.1 Da PI: 9.3053 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.4 | 6.1e-06 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F + L H+r+H Solyc03g093870.1.1 80 HECSICGKKFATGQALGGHMRKH 102 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 110 | 40 | 59 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.2E-7 | 42 | 60 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.7E-6 | 73 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.61E-7 | 78 | 105 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.8E-11 | 80 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MNMMLKRSKV EEESVEKFAM ANCADIMKRN ELLERPNLIF KCKKRFESFQ ALGGHMTSHK 60 NKLTTMSTNG ELLHVNLQKH ECSICGKKFA TGQALGGHMR KHQDELNQLE HKKKKKMKLD 120 ESLIKSGREL AEALNSKSDE LHDKLDLESS KRTLFLGLNL DLNLTIDENE LRTG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g093870.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235433.2 | 1e-122 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A3Q7FLI4 | 1e-121 | A0A3Q7FLI4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g093870.1.1 | 1e-121 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 3e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g093870.1.1 |
Entrez Gene | 101246118 |
Publications ? help Back to Top | |||
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