PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g093610.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 243aa    MW: 26760.4 Da    PI: 8.0388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g093610.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19106156255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ +aeeAa a+++a+ +++g
  Solyc03g093610.1.1 106 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYESAEEAALAYDKAAFRMRG 156
                         7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.0E-32105165IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-23106166IPR016177DNA-binding domain
SMARTSM003801.8E-37106170IPR001471AP2/ERF domain
PfamPF008473.3E-14106156IPR001471AP2/ERF domain
CDDcd000181.85E-31106165No hitNo description
PROSITE profilePS5103224.223106164IPR001471AP2/ERF domain
PRINTSPR003671.6E-13107118IPR001471AP2/ERF domain
PRINTSPR003671.6E-13146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MYQLPTSTEL TFFPAEFPVY CRSSSFSSLM PCLTESWGDL PLKVNDSEDM VIYGFLQDAF  60
SIGWTPSNLT SEEVKLEPRE EIEPAMSTSV SPPTVAPAAL QPKGRHYRGV RQRPWGKFAA  120
EIRDPAKNGA RVWLGTYESA EEAALAYDKA AFRMRGTKAL LNFPHRIGLN EPEPVRVTVK  180
RRLSESASSS VSSASESGSP KRRRKGVAAK QAELEVESRG PNVMKVGCQM EQFPVGEQLL  240
VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-37103171270ATERF1
3gcc_A6e-37103171270ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.41400.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present in stems. {ECO:0000269|PubMed:12935902}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g093610.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strong induction by ethylene and by wounding. {ECO:0000269|PubMed:12935902}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0131510.0Lycopersicon esculentum clone 134153F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316388.21e-178ethylene response factor A.2
SwissprotQ84XB31e-169ERF1_SOLLC; Ethylene-responsive transcription factor 1
TrEMBLA0A3Q7GAZ81e-177A0A3Q7GAZ8_SOLLC; Uncharacterized protein
STRINGSolyc03g093610.1.11e-178(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-61ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]