PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g093550.1.1 | ||||||||
Common Name | LOC101267295 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 27465.3 Da PI: 9.5054 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.4e-20 | 102 | 152 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta +Aaka+++a+ kl+g Solyc03g093550.1.1 102 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAVDAAKAYDRAAFKLRG 152 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-33 | 101 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.33E-33 | 101 | 160 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-23 | 102 | 162 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.0E-14 | 102 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.118 | 102 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-38 | 102 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-14 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-14 | 142 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGSPQEIYTS LDSIREHLLD DDVAFMEYYC SKSCFSFQTS NLDHTSKTEY DGFFKFEAKP 60 HVISSNSPKQ SNLRERKPSL NIAIPAKPIV VVENVESEKK KHYRGVRQRP WGKFAAEIRD 120 PNRKGTRVWL GTFDTAVDAA KAYDRAAFKL RGSKAILNFP LEVANFKQQN DETKTEMKSS 180 GSKRMRGETE ELVIKKERKL QEERVVPMAS PLTPSNWSTI WDGTGIFEVP PLSPLSQLVM 240 I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-32 | 99 | 163 | 2 | 66 | ATERF1 |
3gcc_A | 2e-32 | 99 | 163 | 2 | 66 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.4531 | 0.0 | flower| fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g093550.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY559315 | 0.0 | Lycopersicon esculentum ethylene response factor 5 (ERF5) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235185.1 | 0.0 | ethylene-responsive transcription factor 5-like | ||||
Swissprot | Q40478 | 1e-100 | ERF5_TOBAC; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A3Q7FNS2 | 1e-180 | A0A3Q7FNS2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g093550.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 5e-46 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g093550.1.1 |
Entrez Gene | 101267295 |
Publications ? help Back to Top | |||
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