PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g093530.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 119aa MW: 13197.7 Da PI: 9.0291

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g093530.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.6	4.8e-16	72	114	2	47
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 +y+GVr+++ +g+++AeIrdp++ g r++lg++ t +Aa+a++ Solyc03g093530.1.1 72 QYRGVRRRP-WGKYAAEIRDPTWKG--SRVWLGTYETDVDAARAYD 114 7******.******99965..******99****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.11E-20	71	118	No hit	No description
Gene3D	G3DSA:3.30.730.10	7.8E-23	71	117	IPR001471	AP2/ERF domain
Pfam	PF00847	1.8E-9	72	115	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.981	72	118	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-16	72	117	IPR016177	DNA-binding domain
SMART	SM00380	1.6E-13	72	118	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.4E-10	73	84	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.4E-10	96	112	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MISKEEEKLT LQLIREHLLG DSFIHYHPIP RVNTSDGHSS IPTTSSVGSN PDRKFSGSGN 60 GSSPADEGTK KQYRGVRRRP WGKYAAEIRD PTWKGSRVWL GTYETDVDAA RAYDCVAF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-18	71	118	4	51	ATERF1
3gcc_A	1e-18	71	118	4	51	ATERF1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g093530.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213008	2e-07	Solanum lycopersicum chromosome 12 clone LE_HBa-144B17, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015069273.1	6e-65	ethylene-responsive transcription factor ERF106-like
TrEMBL	A0A3Q7FNR7	7e-45	A0A3Q7FNR7_SOLLC; Uncharacterized protein
STRING	Solyc03g093530.1.1	1e-83	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	1e-25	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc03g093530.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]