PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g063200.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C3H

Protein Properties

Length: 164aa MW: 17480 Da PI: 10.2252

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g063200.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.1	1.7e-09	91	116	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ f Ck+Gd+C+FaHg+ Solyc03g063200.2.1 91 KTKICSKFNTAEGCKFGDKCRFAHGE 116 89**********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.6	34	61	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.408	34	62	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.8E-6	35	60	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-7	36	59	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.19	42	59	No hit	No description
Gene3D	G3DSA:4.10.1000.10	1.8E-13	87	119	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-8	88	119	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.249	89	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.1E-4	89	116	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.3E-7	91	116	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MEIRKRNRNE SGFNGNAGFK KAKPEMDSLS SGIGSKSKPC TKFFSTVGCS FGENCHFLHY 60 VPGGYNVVAK MMNIAPSPAS PIPSGNTPAV KTKICSKFNT AEGCKFGDKC RFAHGEWEIG 120 KPIVPSPRAM GVGPIPDRFG GRRESPVASF AHLLADRSQT GNP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g063200.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC247225	1e-180	Solanum lycopersicum strain Heinz 1706 chromosome 3 clone sle-5g9 map 3, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234819.1	1e-106	zinc finger CCCH domain-containing protein 14-like
Swissprot	Q7F8R0	2e-42	C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBL	A0A3Q7FL70	1e-105	A0A3Q7FL70_SOLLC; Uncharacterized protein
STRING	Solyc03g063200.2.1	1e-117	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA19964	3	3
Representative plant	OGRP1026	17	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	5e-31	C3H family protein

Link Out ? help Back to Top
Phytozome	Solyc03g063200.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]