PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g062670.1.1
Common NameLOC101267494
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 283aa    MW: 33025.3 Da    PI: 4.5649
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g062670.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.92.7e-2151293128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         +G+rFhPtd el+ +yLk+  +g+    +++ i+ +diy    Pw++   ++++ek  yf ++ +k++ ++kr  r+  +g+Wk +  +  
  Solyc03g062670.1.1   5 MGIRFHPTDTELI-NYLKRFFKGELSLNQQCpIQFADIYGDqPPWEIF-GANSKEKFHYFITPLKKRKIKDKRFCRTCVKGTWKGQTAEDL 93 
                         7************.9*******9985444556*******87368***6.56666677789999999999***************9999888 PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + ++  g +vg k+ + f   +++ g++ +W+m eyr+
  Solyc03g062670.1.1  94 IRRNnMGPVVGFKRNFRFE--TSECGQNKTWLMIEYRV 129
                         888656677*********8..788999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.4743153IPR003441NAC domain
SuperFamilySSF1019416.15E-225153IPR003441NAC domain
PfamPF023656.2E-155129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSKQMGIRFH PTDTELINYL KRFFKGELSL NQQCPIQFAD IYGDQPPWEI FGANSKEKFH  60
YFITPLKKRK IKDKRFCRTC VKGTWKGQTA EDLIRRNNMG PVVGFKRNFR FETSECGQNK  120
TWLMIEYRVA DSFFKENNHI VKEDFVVCRI KKKKDVDHHV MDAEDEGVAG VIDPMLLLEP  180
NHNNDYSTTE LDQVRVCEAI TLNDDVQNSN TMENRETSLE VEESDRVDGI RGDEDMCRIF  240
EDILDVDIPN VIDDIKSDED MYRMFEDIVI GIPDEWLEDS LV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RIKKKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g062670.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469310.0Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence
GenBankAC2469970.0Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234876.20.0NAC domain containing protein 52-like
TrEMBLA0A3Q7FKY80.0A0A3Q7FKY8_SOLLC; Uncharacterized protein
STRINGSolyc03g062670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.14e-16NAC domain containing protein 52
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]