PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g044690.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 350aa MW: 40826.6 Da PI: 9.2386 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.6 | 1.9e-08 | 88 | 140 | 37 | 90 |
FAR1 37 kegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++g ++++++k+ +++r+r e r+gC a++k k + + wev +++ eH+H++ Solyc03g044690.1.1 88 RKGPKTHNRNKEMTRKRQRLEYRCGCLAHIKFKIS-NVIWEVCEFSDEHSHPMI 140 45556666666799999****************99.9**************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-6 | 85 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.4E-22 | 262 | 343 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MIYSTFIQSL TKLVIVYSII YSSYFDTYHL KIVIVAHNVN DQKYSTRTHN VSSINKKFVF 60 EIGMKFVSEE YSCNAYNSYD VAKGFEIRKG PKTHNRNKEM TRKRQRLEYR CGCLAHIKFK 120 ISNVIWEVCE FSDEHSHPMI EYNLRHFIQS GRKLTNSTKN ILGSMLDAGI RTKKVVRYLQ 180 YEEGGIENAG FIEQDAHKFV QAHKRNMISS GDAQTLINHF RHLHSEDSKF FYSFQVDEDG 240 RLCNFFWRDS ISRLHYQCFG DVTIFDTTYR TNRYNMICSP FVGVNNHWKN VFFLCAFSCN 300 ETTDSFVCLF QTFLKGMGGK TPKTIFKDQD HAMAAVIRQV FPKHISSIV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g044690.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233126 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-162g22 map 1, complete sequence | |||
GenBank | AC246946 | 0.0 | Solanum lycopersicum chromosome 3 clone HBa0188D04, complete sequence | |||
GenBank | AC247010 | 0.0 | Solanum lycopersicum chromosome 3 clone HBa0188D04, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019261901.1 | 1e-113 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | K4BG86 | 0.0 | K4BG86_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g044690.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1726 | 9 | 31 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-51 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g044690.1.1 |
Publications ? help Back to Top | |||
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