PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g043580.1.1
Common NameLOC101262388
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 324aa    MW: 36851.8 Da    PI: 4.5574
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g043580.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.9e-16271091098
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           +++rl++p  fa++h ++  ++  + le ++g+sWev++  ++++g+++l+kGW++F++   + ++ +++F+++ r  f   v +++
  Solyc03g043580.1.1  27 LDELRRLRIPVVFAKRHCENMLNP--VFLEAPHGKSWEVEV--ENSQGQIWLAKGWSDFCDYYSISVKSVLMFTYNPRCHF--SVAIYD 109
                         445678***********4444444..***************..*******************************9877777..777766 PP
2B346.94.9e-152333051087
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +++++ + +p +fa++ ++++ +   ++l +e+g +W+v++  +  ++++++++GW  F k+n++  g++++Fkl++ 
  Solyc03g043580.1.1 233 SHATC-MAIPLRFAQQTDIINMK--NMRLVNEEGVEWKVEI--EYARSMVIIKQGWTAFRKDNKIANGETCLFKLIQG 305
                         34445.99******999888554..7***************..888899*************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-2012111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1913110IPR015300DNA-binding pseudobarrel domain
CDDcd100177.74E-1518109No hitNo description
PROSITE profilePS5086311.61718111IPR003340B3 DNA binding domain
SMARTSM010193.5E-920111IPR003340B3 DNA binding domain
PfamPF023629.9E-1328109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-16221311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-16221311IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.66223317IPR003340B3 DNA binding domain
CDDcd100171.33E-10224306No hitNo description
SMARTSM010197.7E-7226319IPR003340B3 DNA binding domain
PfamPF023621.3E-12235304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MANEFHGSSL RSSSPNNPKF IQIITSLDEL RRLRIPVVFA KRHCENMLNP VFLEAPHGKS  60
WEVEVENSQG QIWLAKGWSD FCDYYSISVK SVLMFTYNPR CHFSVAIYDQ SKTEIEYPID  120
KDIESDEQEE DILFAQANAN IIEEDILILQ SNANVIEEDI PILQSNANVI EDEEEHIPVN  180
CPQTNANVIE QHKEVGEANS ISEKVGPNNY SSRYSLVDLT GDNPFFEMVI KKSHATCMAI  240
PLRFAQQTDI INMKNMRLVN EEGVEWKVEI EYARSMVIIK QGWTAFRKDN KIANGETCLF  300
KLIQGPIANV LQVQKIPTPL CLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g043580.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384760.0Solanum lycopersicum chromosome 3 clone C03SLm0006J07, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234716.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A494GAC90.0A0A494GAC9_SOLLC; Uncharacterized protein
STRINGSolyc03g043580.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-20B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]