PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g042500.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 204aa MW: 23352.1 Da PI: 4.1267 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.8 | 4.1e-13 | 14 | 87 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +v++k+++e+ + + le ++g+ Wev++ ++++g+++l+kGW++F++ + ++ ++F+++ rs f vv ++++ Solyc03g042500.1.1 14 VVFSKRHCENKF-N-----PVFLEFPHGKAWEVEV--DNSQGQIWLAKGWSDFCDYYSISVKSLLMFTYNPRSHF--VVAIYDQ 87 456667773333.3.....299*************..********************************988888..9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.687 | 1 | 88 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-13 | 9 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-13 | 9 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.39E-9 | 15 | 86 | No hit | No description |
Pfam | PF02362 | 1.0E-9 | 15 | 87 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MRHLGARPIL RILVVFSKRH CENKFNPVFL EFPHGKAWEV EVDNSQGQIW LAKGWSDFCD 60 YYSISVKSLL MFTYNPRSHF VVAIYDQSTT EIEYPIDQDI ESDEQEEDIL VSQGNANVID 120 EDILILQSNA YVIEEDIPIF QSNANVIKDE KEDIPVNCPQ TNANVFEQHK EVGEANNICE 180 KVVPNNYSSQ YILVDLTGDN PFF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g042500.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238476 | 0.0 | Solanum lycopersicum chromosome 3 clone C03SLm0006J07, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234716.1 | 1e-117 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A3Q7FGM0 | 1e-116 | A0A3Q7FGM0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g042500.1.1 | 1e-148 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7499 | 5 | 24 | Representative plant | OGRP1718 | 5 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g042500.1.1 |
Publications ? help Back to Top | |||
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