PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g033660.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 296aa    MW: 33283.4 Da    PI: 9.4449
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g033660.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.83.1e-18214248135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Solyc03g033660.2.1 214 CSHCGVHKTPQWRTGPMGAKTLCNACGVRFKSGRL 248
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-7729288IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.635208244IPR000679Zinc finger, GATA-type
SMARTSM004016.0E-17208262IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.61E-14210271No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14212246IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.16E-13213270No hitNo description
PROSITE patternPS003440214239IPR000679Zinc finger, GATA-type
PfamPF003203.7E-16214248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MLYRTAPHYS SSPLQMNSLE KALKTSYFRP ETAMKMTHNQ PSIDDFFVDN LLDLSNGFAE  60
DEIEQLNEHP NGFNTQNLCS VSPQKKMEDE NGDFGCELSY PENGLDNLEW LSQFVEEDSH  120
SGYSLIGKLP VKKNKSVTEN PVQVNSCFTV PVQTKPRTKR RRIGGRVWSF TGSSTSSASS  180
STITTTAESI VRFPASVSNR RKMKTEKPVQ PRRCSHCGVH KTPQWRTGPM GAKTLCNACG  240
VRFKSGRLLP EYRPACSPTF SSERHSNNHR KVLEMRQKKE ERTGGDRFAP PVHSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158162KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g033660.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154359e-36Solanum lycopersicum chromosome 2 clone C02HBa0291P19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234546.10.0GATA transcription factor 5-like
TrEMBLA0A3Q7G5650.0A0A3Q7G565_SOLLC; GATA transcription factor
STRINGSolyc03g033660.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.29e-53GATA transcription factor 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]