PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g025170.1.1
Common NameGRAS10
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 632aa    MW: 69127.1 Da    PI: 6.5983
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g025170.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.12.2e-1082646313374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + ++e+A+a+ +g++  a ++L+rls+ a+ +g++ qRl+ay++ AL++rl+     +    p+ e    +s+e++  ++ ++evsP++k+
  Solyc03g025170.1.1 264 QSIIEAATAIYDGKNDVALEILTRLSQVANIRGSSDQRLTAYMVAALRSRLNP----VDYPPPVLEL---QSKEHTETTHNLYEVSPCFKL 347
                         6789************************************************9....3333344444...47888888899********** PP

                GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         ++++aN aIleav+ +  +++H+iDfdi+qG+Q++ Ll+aLa+++ ++p+ l+iT++ +++ g  e+l++++  L+++A++lgv + fnv 
  Solyc03g025170.1.1 348 GFMAANLAILEAVADHpfNKLHVIDFDIGQGGQYLHLLHALAAKKsNNPAVLKITAFTEQAGGVDERLNSIHMELNSVANRLGVCLYFNV- 437
                         ***************999************************77637777*********8888**************************9. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         ++ +++dl+ e+L ++p++alaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv+vveq+++ n+++Fl+r+ ea+ +y a+fdsl+
  Solyc03g025170.1.1 438 MSCKVADLSRENLGLDPDDALAVNFAFKLYRLPDESVTTENLRDELLRRVKALSPKVVTVVEQDMNGNTAPFLARVNEACGHYGAIFDSLD 528
                         7889*************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlg 361
                         a++pr+s +r+ +E+  l+r+ +n vaceg++r+er+e ++kWr+r+++aGF+p p+s+ +a++ ++ l+     + g++v+e+sg +++g
  Solyc03g025170.1.1 529 ATVPRDSMDRVRIEEG-LSRKMCNSVACEGRDRVERCEVFGKWRARMSMAGFGPKPVSQIVANSLRSKLNSGTrgNPGFTVNEQSGGICFG 618
                         ****************.************************************************9999876556899************* PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++r+L+++SaWr
  Solyc03g025170.1.1 619 WMGRTLTVASAWR 631
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.394236609IPR005202Transcription factor GRAS
PfamPF035147.6E-106264631IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MSSGFSGEIY GAGGRSTMNN NNSQRPYSSP LSGILPDPVT QMVHQGRPNL MGKRSLAEFQ  60
QQQQLQFLQL QQQKQQQQQM MLLQQQQQQG IGFYLRNVKP RSYQQSSPMS PLSPVDFSIA  120
AAASISSSNS NVSTMMNTRQ ALPVLQQPAN MGGFLSPGIQ NYSTGVSSLN PVQNGATIGV  180
QESDKKMMNC LQELEKQLLD DNDEEEGDTV SVITNNEWSE TIQNLISPSQ NQNQIQKLAS  240
LSPSSSTSSC ASSTESPAIS CPKQSIIEAA TAIYDGKNDV ALEILTRLSQ VANIRGSSDQ  300
RLTAYMVAAL RSRLNPVDYP PPVLELQSKE HTETTHNLYE VSPCFKLGFM AANLAILEAV  360
ADHPFNKLHV IDFDIGQGGQ YLHLLHALAA KKSNNPAVLK ITAFTEQAGG VDERLNSIHM  420
ELNSVANRLG VCLYFNVMSC KVADLSRENL GLDPDDALAV NFAFKLYRLP DESVTTENLR  480
DELLRRVKAL SPKVVTVVEQ DMNGNTAPFL ARVNEACGHY GAIFDSLDAT VPRDSMDRVR  540
IEEGLSRKMC NSVACEGRDR VERCEVFGKW RARMSMAGFG PKPVSQIVAN SLRSKLNSGT  600
RGNPGFTVNE QSGGICFGWM GRTLTVASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3928963124375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.57020.0callus| flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g025170.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3998310.0Lycopersicon esculentum GRAS10 (GRAS10) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234327.10.0GRAS10 protein
SwissprotQ9FYR71e-165SCL8_ARATH; Scarecrow-like protein 8
TrEMBLQ00LP00.0Q00LP0_SOLLC; GRAS10
STRINGSolyc03g025170.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Representative plantOGRP7599918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-156SCARECROW-like 8
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Mayrose M,Ekengren SK,Melech-Bonfil S,Martin GB,Sessa G
    A novel link between tomato GRAS genes, plant disease resistance and mechanical stress response.
    Mol. Plant Pathol., 2006. 7(6): p. 593-604
    [PMID:20507472]