PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g007380.1.1 | ||||||||
Common Name | LOC101256065 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 354aa MW: 40062.8 Da PI: 6.5628 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.5e-29 | 141 | 202 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g+++pr+YYrCt + gC ++k+v+rs+edp+++e+tY+g+H+++ Solyc03g007380.1.1 141 LDDGYSWRKYGQKDILGAKHPRGYYRCTLRhvqGCLATKQVQRSDEDPNIFEVTYRGRHTCN 202 59**************************988889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.502 | 136 | 199 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-28 | 138 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-26 | 140 | 203 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-41 | 141 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-27 | 142 | 201 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MDNYGADNNS HEINRLVSHE LTQGRDLVQQ LQLHLNAPNS SSSSENTREF LLHNIQFKFD 60 RALSLLQCNT INGDNSNSSL PRSNSPAIPI IGMSDSPRSS EDSDRDLEPK EHHATRKRKS 120 STPRWTKQVQ IQPGAPIEGT LDDGYSWRKY GQKDILGAKH PRGYYRCTLR HVQGCLATKQ 180 VQRSDEDPNI FEVTYRGRHT CNQGGGASVS NVNPAPPPLP LPLVIHQIQE PNIGNHEQYQ 240 QLNQNPNEIL LNFQKSLSIS KDDFNFKNTH HDQPNNVPYI PSFNNYPSSS SNDHQDYNFL 300 NNSSTIPNNI FVESFPPSFN NMSTGTSQQN EADYQFNSMG FESNFPYDYH RFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-19 | 141 | 201 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 119 | TRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g007380.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009295 | 5e-13 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234275.1 | 0.0 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A3Q7FDQ3 | 0.0 | A0A3Q7FDQ3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g007380.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11743 | 19 | 22 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 3e-41 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g007380.1.1 |
Entrez Gene | 101256065 |
Publications ? help Back to Top | |||
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