PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g005990.2.1

Common Name

LOC101246895

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BES1

Protein Properties

Length: 324aa MW: 34696.6 Da PI: 8.1335

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g005990.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	207.7	3.1e-64	2	145	1	148
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 ++++r ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGtty+kg+kp + +++g sas+sp+ Solyc03g005990.2.1 2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCKEAGWIVEEDGTTYKKGCKPVGHVDIIGYSASVSPC 92 5899************************************************************************************* PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvss 148 ss+q +sp +sy++sp+sssfpsp+s++ + + ++ ++l+p+l++ls+ ss Solyc03g005990.2.1 93 SSYQ--------PSPGASYNPSPASSSFPSPVSSNYVANVQNnhdpNTLIPWLKNLSSGSS 145 ........9**************999987665555888*******998443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.1E-65	3	141	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCKEAG 60 WIVEEDGTTY KKGCKPVGHV DIIGYSASVS PCSSYQPSPG ASYNPSPASS SFPSPVSSNY 120 VANVQNNHDP NTLIPWLKNL SSGSSPSSSR FPHHLYIPGS SISAPVTPPL SSPTARTPRM 180 SDDPMANSGW AQQHYAFLPS STPASPGRQT PPDSGWLSGV QTPQDGPSSP TFSLVSPNPF 240 GFKEPISNGG SRMWTPGQSG ACSPAIASGI DQTADVPMSD AISAEFAFGS HMMGLVKPWE 300 GERIHEECAT DDLELTLGNS STR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.17399	0.0	callus\| cell culture\| leaf

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g005990.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234074.1	0.0	BES1/BZR1 homolog protein 4 isoform X1
Refseq	XP_004234075.1	0.0	BES1/BZR1 homolog protein 4 isoform X2
Refseq	XP_006356092.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4-like isoform X1
Refseq	XP_006356093.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4-like isoform X2
Swissprot	Q9ZV88	1e-131	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A3Q7FF78	0.0	A0A3Q7FF78_SOLLC; Uncharacterized protein
TrEMBL	M1CNX3	0.0	M1CNX3_SOLTU; Uncharacterized protein
STRING	Solyc03g005990.2.1	0.0	(Solanum lycopersicum)
STRING	PGSC0003DMT400071511	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1984	24	64
Representative plant	OGRP1595	15	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-116	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Solyc03g005990.2.1
Entrez Gene	101246895

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]