PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g005510.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 176aa    MW: 20073.6 Da    PI: 9.4647
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g005510.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-1949100256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr +  +g+++AeIrdp+ +g  +r +lg+f+tae+Aa+a+++a+ +l+g+
  Solyc03g005510.1.1  49 KYRGVRKRT-WGKFAAEIRDPTRQG--ARQWLGTFDTAEDAARAYDKAAFNLRGH 100
                         8*****887.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-1249100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3149109IPR001471AP2/ERF domain
SMARTSM003802.9E-3549113IPR001471AP2/ERF domain
PROSITE profilePS5103223.72349107IPR001471AP2/ERF domain
CDDcd000183.00E-3049108No hitNo description
SuperFamilySSF541718.5E-2349108IPR016177DNA-binding domain
PRINTSPR003673.3E-105061IPR001471AP2/ERF domain
PRINTSPR003673.3E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSMWCVPPKK NLSHIIINMD SSSSSSSSKG KKVIQLEKEN SKDSNDLIKY RGVRKRTWGK  60
FAAEIRDPTR QGARQWLGTF DTAEDAARAY DKAAFNLRGH LATLNFPNEY YSKLNDPHYY  120
NYRTSLNVNI PSRSLERGIS SIGHQDKEII EFEYLDDSVL EELLGAEDPK KIIRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-294915914114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g005510.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682680.0S.lycopersicum DNA sequence from clone LE_HBa-207A3, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234235.31e-113ethylene-responsive transcription factor ERF098-like
RefseqXP_027771791.11e-113ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q7FEY81e-127A0A3Q7FEY8_SOLLC; Uncharacterized protein
STRINGSolyc03g005510.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-38ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]