PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g094460.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 275aa    MW: 31325 Da    PI: 4.49
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g094460.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-1874164187
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+l +sdv++++r+v+pkk ae++    +   +e++ +t+ d +g  +W+++++y  +++s++yvl+ ++ +Fv+ ++L++gD + +++
  Solyc02g094460.1.1  74 FDKQLQNSDVSSLRRIVVPKKAAERYlpalE--IKEGFPITMDDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFVQTHELRQGDYFALHY 161
                         89**************************544..557788********9*********888899999999.******************998 PP

                         -SS CS
                  B3  85 dgr 87 
                         +++
  Solyc02g094460.1.1 162 NDQ 164
                         754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.41E-2172161No hitNo description
SuperFamilySSF1019366.67E-2072167IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-2472167IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-1574164IPR003340B3 DNA binding domain
PROSITE profilePS508639.1574176IPR003340B3 DNA binding domain
SMARTSM010191.6E-1374176IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEITEAYGVM ADGNNNNSNS MMNPPTPTKR SRSQRRRRSS LNFTSLDFLS HVPPPLPPLP  60
PARVLEPTGF RFLFDKQLQN SDVSSLRRIV VPKKAAERYL PALEIKEGFP ITMDDMDGIH  120
VWSFRYRYWP NNSSRMYVLE NTGDFVQTHE LRQGDYFALH YNDQKQIYGI EARKAGSGAV  180
FRGYEAEDVI LTDYAQAADD GNGALMNEAE MDMSSFYFPA MDNEMGMSFI YDTSFWNEPA  240
FDFVGGPMTY YSTNVYPMPS FGSIEDSFSV DDFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-46711772108B3 domain-containing transcription factor FUS3
6j9b_D3e-46711772108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g094460.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156001e-178Solanum lycopersicum chromosome 2 clone C02HBa0098J01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231748.20.0B3 domain-containing transcription factor FUS3
TrEMBLA0A3Q7FCD90.0A0A3Q7FCD9_SOLLC; Uncharacterized protein
STRINGSolyc02g094460.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.18e-54B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]