PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g094340.1.1 | ||||||||
Common Name | LOC101261388 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 681aa MW: 75476.2 Da PI: 5.2628 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 434.2 | 1e-132 | 315 | 679 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsP 89 lv+lLl+cAeavs++d la+++L +l+ ++p gd+mqR+a++fteAL arla + + ++ p++ + + ns e l++++++++++P Solyc02g094340.1.1 315 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAATLATKPSTSVPKPFNpfPPNSLEILKIYQILYQACP 405 68****************************************************955444444444443301456**************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 ++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs e+++etg+ L+++A++l+vpfef++ Solyc02g094340.1.1 406 YVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----YPEAVRETGRCLTELAQSLHVPFEFHP 492 ************************************************************....9************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 v ++ledl++++++ + gEalaVn+v +lhr++ ++ ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl Solyc02g094340.1.1 493 -VGEQLEDLKPHMFNRRIGEALAVNSVNRLHRVP--GN----CIGNLLGMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSL 576 .7*******************************9..33....4446********************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +a++p +s++r+k+E+ ++g+ei+n+v+ceg er rhe+lekWr+ +e GFk v+ls +a++q k ll ++ dgy++ e++g+l+lgW Solyc02g094340.1.1 577 DATFPGDSSQRAKLEQYIFGPEIMNIVSCEGMERMVRHERLEKWRRVMEGKGFKGVALSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGW 667 ******************************************************************************************* PP GRAS 363 kdrpLvsvSaWr 374 +dr+++++SaWr Solyc02g094340.1.1 668 QDRAILAASAWR 679 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.402 | 289 | 659 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-130 | 315 | 679 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MGSLKNDIIK NEVGSEITSF KDQNSYIKLL PEDSLASSES KKVTPISSDF ELDCGSLIPT 60 SLTFPPGGGD DDDVEIQSPD NSIWESFFAD QLEADFMISS PVRNLSSTST FCTTTTTHNN 120 NTYTHHNQGI HGQSMMMCSP PRSPLRPNNY NSTNKGKGLS PFQKVFNSPN NQFMQIESFN 180 LPALESFLDD DLASEYSTLK VSDVGSSSES LSVIPDFLEC LALPNSSSNT SASFMGSLLS 240 NTSVGQVDDE IFQTGSIAPL SQQLHQERHH EKQQKQIPTH VQLPSTQQQY TQMINHNLVV 300 AAPDQMQEQD SGLQLVHLLL ACAEAVSKED YMLARRYLHH LNRVVTPIGD SMQRVASCFT 360 EALTARLAAT LATKPSTSVP KPFNPFPPNS LEILKIYQIL YQACPYVKFA HFTANQAIFE 420 AFEAEERVHV IDLDILQGYQ WPAFMQALAA RPGGAPFLRI TGVGSYPEAV RETGRCLTEL 480 AQSLHVPFEF HPVGEQLEDL KPHMFNRRIG EALAVNSVNR LHRVPGNCIG NLLGMIRDQA 540 PNIVTIVEQE ASHNGPYFLG RFLEALHYYS AIFDSLDATF PGDSSQRAKL EQYIFGPEIM 600 NIVSCEGMER MVRHERLEKW RRVMEGKGFK GVALSANAVT QSKILLGLYS CDGYKLTEDN 660 GCLLLGWQDR AILAASAWRC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-98 | 322 | 678 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-98 | 322 | 678 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g094340.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215432 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0257H21, complete sequence | |||
GenBank | AC215457 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0061K08, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019068113.1 | 0.0 | DELLA protein RGL1-like | ||||
Swissprot | G7L166 | 0.0 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | K4BDM9 | 0.0 | K4BDM9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g094340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12566 | 19 | 22 | Representative plant | OGRP5366 | 13 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-98 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g094340.1.1 |
Entrez Gene | 101261388 |
Publications ? help Back to Top | |||
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