PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g094340.1.1
Common NameLOC101261388
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 681aa    MW: 75476.2 Da    PI: 5.2628
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g094340.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.21e-1323156791374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsP 89 
                         lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL arla +  +  ++  p++ +  + ns e l++++++++++P
  Solyc02g094340.1.1 315 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAATLATKPSTSVPKPFNpfPPNSLEILKIYQILYQACP 405
                         68****************************************************955444444444443301456**************** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         ++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs      e+++etg+ L+++A++l+vpfef++
  Solyc02g094340.1.1 406 YVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----YPEAVRETGRCLTELAQSLHVPFEFHP 492
                         ************************************************************....9************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v ++ledl++++++ + gEalaVn+v +lhr++        ++ ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl
  Solyc02g094340.1.1 493 -VGEQLEDLKPHMFNRRIGEALAVNSVNRLHRVP--GN----CIGNLLGMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSL 576
                         .7*******************************9..33....4446********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +a++p +s++r+k+E+ ++g+ei+n+v+ceg er  rhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ dgy++ e++g+l+lgW
  Solyc02g094340.1.1 577 DATFPGDSSQRAKLEQYIFGPEIMNIVSCEGMERMVRHERLEKWRRVMEGKGFKGVALSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGW 667
                         ******************************************************************************************* PP

                GRAS 363 kdrpLvsvSaWr 374
                         +dr+++++SaWr
  Solyc02g094340.1.1 668 QDRAILAASAWR 679
                         ***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.402289659IPR005202Transcription factor GRAS
PfamPF035143.4E-130315679IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MGSLKNDIIK NEVGSEITSF KDQNSYIKLL PEDSLASSES KKVTPISSDF ELDCGSLIPT  60
SLTFPPGGGD DDDVEIQSPD NSIWESFFAD QLEADFMISS PVRNLSSTST FCTTTTTHNN  120
NTYTHHNQGI HGQSMMMCSP PRSPLRPNNY NSTNKGKGLS PFQKVFNSPN NQFMQIESFN  180
LPALESFLDD DLASEYSTLK VSDVGSSSES LSVIPDFLEC LALPNSSSNT SASFMGSLLS  240
NTSVGQVDDE IFQTGSIAPL SQQLHQERHH EKQQKQIPTH VQLPSTQQQY TQMINHNLVV  300
AAPDQMQEQD SGLQLVHLLL ACAEAVSKED YMLARRYLHH LNRVVTPIGD SMQRVASCFT  360
EALTARLAAT LATKPSTSVP KPFNPFPPNS LEILKIYQIL YQACPYVKFA HFTANQAIFE  420
AFEAEERVHV IDLDILQGYQ WPAFMQALAA RPGGAPFLRI TGVGSYPEAV RETGRCLTEL  480
AQSLHVPFEF HPVGEQLEDL KPHMFNRRIG EALAVNSVNR LHRVPGNCIG NLLGMIRDQA  540
PNIVTIVEQE ASHNGPYFLG RFLEALHYYS AIFDSLDATF PGDSSQRAKL EQYIFGPEIM  600
NIVSCEGMER MVRHERLEKW RRVMEGKGFK GVALSANAVT QSKILLGLYS CDGYKLTEDN  660
GCLLLGWQDR AILAASAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-9832267825377Protein SCARECROW
5b3h_D3e-9832267825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g094340.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154320.0Solanum lycopersicum chromosome 2 clone C02HBa0257H21, complete sequence
GenBankAC2154570.0Solanum lycopersicum chromosome 2 clone C02SLe0061K08, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068113.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLK4BDM90.0K4BDM9_SOLLC; Uncharacterized protein
STRINGSolyc02g094340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-98RGA-like 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]