PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g093740.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 251aa    MW: 28840.4 Da    PI: 5.9771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g093740.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-141461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +lv+ +   G  +W+t+++  g+ R++k+c++rw +yl
  Solyc02g093740.2.1 14 RGPWTIEEDHKLVHFILNNGIQCWRTVPKLAGLQRCGKSCRLRWINYL 61
                        89********************************************97 PP
2Myb_DNA-binding521.6e-1667110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++
  Solyc02g093740.2.1  67 RGALSEAEEDQIIELHARLGNR-WSKIASYFP-GRTDNEIKNHWNT 110
                         78889*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.558961IPR017930Myb domain
SuperFamilySSF466891.61E-2811108IPR009057Homeodomain-like
SMARTSM007172.1E-61363IPR001005SANT/Myb domain
PfamPF002494.0E-121461IPR001005SANT/Myb domain
CDDcd001677.74E-51661No hitNo description
PROSITE profilePS5129426.10762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2465116IPR009057Homeodomain-like
SMARTSM007172.7E-1566114IPR001005SANT/Myb domain
PfamPF002492.7E-1567110IPR001005SANT/Myb domain
CDDcd001671.34E-1071110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRQPCCDRV GLKRGPWTIE EDHKLVHFIL NNGIQCWRTV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAL SEAEEDQIIE LHARLGNRWS KIASYFPGRT DNEIKNHWNT RIKKRLQVMG  120
IDPLTHQPID KEHETDELLP ITETYYDKRN ETENNIENAN DISLPNNRLS ENINGELWNK  180
SFKTISTCYS PSISLESINF STTSTATESS SNVAAAPAEE DDSVQQWMDS IFSCAINQLE  240
EDLFLLRKYN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g093740.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153760.0Solanum lycopersicum chromosome 2 clone C02HBa0072B02, complete sequence
GenBankAC2154640.0Solanum lycopersicum chromosome 2 clone C02SLe0121H01, complete sequence
GenBankAC2358010.0Solanum lycopersicum chromosome 3 clone C03HBa0140L21, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068104.10.0transcription factor MYB20
SwissprotP813948e-75MYB15_ANTMA; Myb-related protein 315
SwissprotQ50EX62e-74ODO1_PETHY; Protein ODORANT1
TrEMBLA0A3Q7FBY61e-164A0A3Q7FBY6_SOLLC; Uncharacterized protein
STRINGSolyc02g093740.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-79myb domain protein 40
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]