PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g093130.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 134aa    MW: 15000.8 Da    PI: 6.5187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g093130.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-142441055
                 AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +k+g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Solyc02g093130.1.1  2 RKWGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 44
                        46**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.137152IPR001471AP2/ERF domain
CDDcd000182.24E-23154No hitNo description
SMARTSM003806.0E-29158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-25153IPR001471AP2/ERF domain
PfamPF008472.0E-8244IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYSTPVA AARAYDTAVY YLRGPSARLN FPELLVGDGG  60
LNDLSAASIR KKAIEVGAQV DAVQNSLATH HNHTEEKVHS ETASPSELKP CWFQEKPDLN  120
LKPEPEDPEV DYW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.197800.0flower| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g093130.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315978.12e-95ethylene-responsive transcription factor RAP2-10
RefseqXP_015066067.12e-95ethylene-responsive transcription factor RAP2-10
SwissprotO221745e-45ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A3Q7FDJ04e-94A0A3Q7FDJ0_SOLLC; Uncharacterized protein
STRINGSolyc02g093130.1.16e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-47DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]