PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g092570.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 439aa MW: 49434.5 Da PI: 5.6069 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 308.4 | 1.7e-94 | 55 | 435 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPil 91 ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+ f++AL r a+ +++k l+++ +++++ ++ ++ l f++++P++ Solyc02g092570.1.1 55 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALILRAAK--IGTCKLLTANLNHSMEtHKFSIIELASFVDLTPWH 143 79****************************************************..666666666655544436666666677******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179 +f++ +aN Ileaveg + +Hi+Df++++++Q p+L++a ++R egpp +++T+ g+ e ++ee+g +L +fA++ +v +ef+ Solyc02g092570.1.1 144 RFGFTAANASILEAVEGYSIIHIVDFSLTHCMQIPTLIDAVSTRVEGPPLIKLTVAGATEDLppmLDLSYEELGAKLVNFARSRNVMMEFR 234 **********************************************************776698888999********************* PP GRAS 180 vl.......vakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFler 256 v+ +++ +e+Lrv++ gEal++n++++lh++++e++ +++ r +Lk++++l P++vv+v+++ad +s++++ r Solyc02g092570.1.1 235 VIpssssdgF----SNV-IEQLRVQNlirpdnGEALVINCHMMLHYIPEETTVISNsFRAMFLKAIRNLDPTIVVLVDEDADFTSNNLVCR 320 *977643333....333.66666665555677*****************99998886899******************************* PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 + +a++y + +d++++ lpr s++r+++E+ + ++i+nv+a+eg +r er e +++W +r+++a F++ +se+ ++++k +l +++ Solyc02g092570.1.1 321 LRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVIAQEGIQRLERLEPKSQWVQRMRNANFRSSGFSEEGVTEVKNMLDEHA-A 409 ********************************.********************************************************.9 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373 g+ ++ +++ lvl+Wk++++v+++aW Solyc02g092570.1.1 410 GWGLKRDEEYLVLTWKGHNVVFATAW 435 99************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.457 | 28 | 417 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-92 | 55 | 435 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MQFTESLPPQ VSSFSSLMMN KDSSTNNNQI QRARPWPGFH TSKNLGNIGD TNCMEQLLVH 60 CANAIESNDA TLAQQILWVL NNIAPPDGDS NQRLTCGFLR ALILRAAKIG TCKLLTANLN 120 HSMETHKFSI IELASFVDLT PWHRFGFTAA NASILEAVEG YSIIHIVDFS LTHCMQIPTL 180 IDAVSTRVEG PPLIKLTVAG ATEDLPPMLD LSYEELGAKL VNFARSRNVM MEFRVIPSSS 240 SDGFSNVIEQ LRVQNLIRPD NGEALVINCH MMLHYIPEET TVISNSFRAM FLKAIRNLDP 300 TIVVLVDEDA DFTSNNLVCR LRSAFNYLWI PYDTVDTFLP RGSKQRQWYE ADICWKIENV 360 IAQEGIQRLE RLEPKSQWVQ RMRNANFRSS GFSEEGVTEV KNMLDEHAAG WGLKRDEEYL 420 VLTWKGHNVV FATAWVPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 3e-48 | 55 | 437 | 34 | 420 | Protein SHORT-ROOT |
5b3h_E | 3e-48 | 55 | 437 | 34 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g092570.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226516 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0053H21, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231909.1 | 0.0 | scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-180 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A3Q7FB54 | 0.0 | A0A3Q7FB54_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g092570.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8781 | 24 | 29 | Representative plant | OGRP2499 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g092570.1.1 |
Publications ? help Back to Top | |||
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