PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g092070.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRF

Protein Properties

Length: 569aa MW: 61367.4 Da PI: 8.3139

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g092070.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.8	1e-24	209	252	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Solyc02g092070.2.1 209 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKHVE 252 79****************************************98 PP
2	QLQ	61.7	1.9e-21	139	175	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an PvP++Ll +i+k Solyc02g092070.2.1 139 GPFTPSQWMELEHQALIYKHFVANIPVPHHLLIPIKK 175 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.9E-13	139	175	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.511	140	175	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.7E-15	140	173	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.563	209	253	IPR014977	WRC domain
Pfam	PF08879	8.7E-21	210	252	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008285	Biological Process	negative regulation of cell proliferation
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MDFGGLMTME TAQQSETSNG SGQLKQQRSD DNIWRPSKVP KPADDLSAYC KQQGPTSTLF 60 MRSDSPNDGR GHSTMLSFSS NKSEEIPFLS TNNVSAQDSS TNLPFPLFDS GSYNTRAASA 120 YASGGSNENT PGSFSRFRGP FTPSQWMELE HQALIYKHFV ANIPVPHHLL IPIKKSVNPY 180 AFSGLSAVPY ASSNWGWGTF HLGFAGNTDP EPGRCRRTDG KKWRCSREAV PDQKYCERHI 240 NRGRHRSRKH VEVQNGHAVS GSTTSKVASV APSSSATVIS SSGTLLNSGG ASNSLGTVQQ 300 QLNSLQPSAA NPNTEQLVNR MLGHRGASVI SPTICVKPKD SAISVQKQHN GVELSSLTDF 360 GLVSSDSLLN PSQRNSFVNP KNPIAFLNFN DQERSEQHPV HHFIDGWAKE QSSRASTCWP 420 DQLKDWTQLS MSIPMTASDF ASSSSSPRQE KLTLSPLRVS CNVDPIQMGL GMTSSCGEPM 480 QKTASWVPVC WEHSLGGPLG EVLNSTAGVL QKTTFVSLSN SSSGSSPRGD SKKVHDGIGM 540 CDEVIGLTVA SSVCIPSMEV SCLIKNKH*

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MDFGGLMTME TAQQSETSNG SGQLKQQRSD DNIWRPSKVP KPADDLSAYC KQQGPTSTLF  60
MRSDSPNDGR GHSTMLSFSS NKSEEIPFLS TNNVSAQDSS TNLPFPLFDS GSYNTRAASA  120
YASGGSNENT PGSFSRFRGP FTPSQWMELE HQALIYKHFV ANIPVPHHLL IPIKKSVNPY  180
AFSGLSAVPY ASSNWGWGTF HLGFAGNTDP EPGRCRRTDG KKWRCSREAV PDQKYCERHI  240
NRGRHRSRKH VEVQNGHAVS GSTTSKVASV APSSSATVIS SSGTLLNSGG ASNSLGTVQQ  300
QLNSLQPSAA NPNTEQLVNR MLGHRGASVI SPTICVKPKD SAISVQKQHN GVELSSLTDF  360
GLVSSDSLLN PSQRNSFVNP KNPIAFLNFN DQERSEQHPV HHFIDGWAKE QSSRASTCWP  420
DQLKDWTQLS MSIPMTASDF ASSSSSPRQE KLTLSPLRVS CNVDPIQMGL GMTSSCGEPM  480
QKTASWVPVC WEHSLGGPLG EVLNSTAGVL QKTTFVSLSN SSSGSSPRGD SKKVHDGIGM  540
CDEVIGLTVA SSVCIPSMEV SCLIKNKH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g092070.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010316034.1	0.0	growth-regulating factor 2-like isoform X2
TrEMBL	A0A3Q7FYY8	0.0	A0A3Q7FYY8_SOLLC; Uncharacterized protein
STRING	Solyc02g092070.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1688	23	57
Representative plant	OGRP3357	12	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	5e-91	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Solyc02g092070.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]