PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc02g090820.2.1 | ||||||||
Common Name | HSTF24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 302aa MW: 33257.3 Da PI: 5.594 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.8 | 2.8e-36 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl k+y++++d++++++isw+e g++fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF++++Fk+g+ke Solyc02g090820.2.1 10 FLLKTYQLVDDATTDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQKE 91 9****************************************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll+ i+r+k+ Solyc02g090820.2.1 92 LLTAIRRRKT 101 *******986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.7E-38 | 2 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.8E-59 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-33 | 6 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.4E-20 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-31 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-20 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-20 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MSQRTAPAPF LLKTYQLVDD ATTDDVISWN EIGTTFVVWK TAEFAKDLLP KYFKHNNFSS 60 FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLTAIRRRK TVTSIPAGGK SVAAGTSASP 120 DNSGDDIGSS STSSPDSKNP GSVDTPGKLS QFTDLSDENE KLKKDNQMLS SELVQAKKQC 180 NELVAFLSQY VKVAPDMINR IMSQGTPSGS SLEELVKEVG GVKDLEEQGS YNDNDDKEDD 240 DEKGDTLKLF GVLLKEKKKK RGPDDNIETC GGRGKMMKTV DYNGPWMKMS STAGESSKVC 300 N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-25 | 6 | 104 | 17 | 125 | Heat shock factor protein 1 |
5d5u_B | 6e-25 | 10 | 101 | 29 | 131 | Heat shock factor protein 1 |
5d5v_B | 6e-25 | 10 | 101 | 29 | 131 | Heat shock factor protein 1 |
5d5v_D | 6e-25 | 10 | 101 | 29 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.8471 | 0.0 | callus| cell culture| flower| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc02g090820.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC215355 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0012A12, complete sequence | |||
GenBank | AC233643 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence | |||
GenBank | AC233695 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001308379.1 | 0.0 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 0.0 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A3Q7FBZ5 | 0.0 | A0A3Q7FBZ5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g090820.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9991 | 21 | 27 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36990.1 | 4e-84 | heat shock factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc02g090820.2.1 |
Entrez Gene | 101244435 |
Publications ? help Back to Top | |||
---|---|---|---|
|