PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g090800.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 132aa    MW: 15067 Da    PI: 8.7008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g090800.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1788129348
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaia 48 
                         ++GVr+++ +g+W+AeIrdp     +  +r +lg+f tae+Aa+a+++
  Solyc02g090800.1.1  88 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFATAEDAARAYDK 129
                         8*******.**********7.....337******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.90287131IPR001471AP2/ERF domain
SMARTSM003801.2E-1587130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2487129IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1688130IPR016177DNA-binding domain
CDDcd000181.28E-2388128No hitNo description
PfamPF008479.5E-1188129IPR001471AP2/ERF domain
PRINTSPR003673.3E-118899IPR001471AP2/ERF domain
PRINTSPR003673.3E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MTILCEDSLL EQENVSYTLT HKLTQEQENY YMVSALRHVV SGTGDNDEAS QLLLEVENAS  60
SGNLACRSID VELEKGKKRR RRNTKKEFRG VRQRPWGKWA AEIRDPHKAQ RLWLGTFATA  120
EDAARAYDKK L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1686129448ATERF1
3gcc_A1e-1686129448ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g090800.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153550.0Solanum lycopersicum chromosome 2 clone C02HBa0012A12, complete sequence
GenBankAC2336430.0Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence
GenBankAC2336950.0Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233630.24e-94ethylene-responsive transcription factor ERF109-like
TrEMBLA0A3Q7FCH28e-93A0A3Q7FCH2_SOLLC; Uncharacterized protein
STRINGSolyc02g090800.1.11e-93(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.15e-20ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]