PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g090770.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 23458.1 Da PI: 7.0994 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.7e-18 | 89 | 137 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+W+AeIrdp + +r +lg+f tae+Aa+a+++ + +++g Solyc02g090770.1.1 89 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFVTAEDAARAYDKKAVEFRG 137 8*******.**********7.....337**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.9E-34 | 88 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 88 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.209 | 88 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-10 | 89 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.31E-28 | 89 | 145 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-21 | 89 | 146 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.0E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDNLSSFTHK LTHQQESHYM VSALKHVFSG AAVDGRADGE AAQLLWEVEN AATSDNSMPR 60 RSINVHPVHV ELELGKKKQR RRRNTKKEFR GVRQRPWGKW AAEIRDPHKA QRLWLGTFVT 120 AEDAARAYDK KAVEFRGNKA KTNFPLKEYI DDHDNSSPMM KVEEHENDQN VMNGDENNNN 180 GDDFWATLED DRLVKFITQD MSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 87 | 147 | 4 | 65 | ATERF1 |
3gcc_A | 4e-22 | 87 | 147 | 4 | 65 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g090770.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215355 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0012A12, complete sequence | |||
GenBank | AC233643 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence | |||
GenBank | AC233695 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065485.1 | 1e-135 | ethylene-responsive transcription factor ERF095-like | ||||
TrEMBL | A0A3Q7FCG6 | 1e-150 | A0A3Q7FCG6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g090770.1.1 | 1e-151 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 1e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g090770.1.1 |
Publications ? help Back to Top | |||
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