PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g089540.2.1 | ||||||||
Common Name | CO1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | CO-like | ||||||||
Protein Properties | Length: 392aa MW: 43436.3 Da PI: 5.7556 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.5e-06 | 12 | 53 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+ +++ + +C+ ++ +lC+ C +H H++ Solyc02g089540.2.1 12 RVCDSCHSATCTVYCRADSAYLCAGCDARIHTAslmasrHER 53 79*****************************55677777765 PP | |||||||
2 | zf-B_box | 29 | 2.3e-09 | 54 | 99 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC++C +H+ H +vp+ Solyc02g089540.2.1 54 VWVCEACERAPAAFLCKADAASLCASCDADIHSAnplarrHHRVPI 99 689*****************************66899999877775 PP | |||||||
3 | CCT | 69.8 | 6.9e-24 | 322 | 365 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Solyc02g089540.2.1 322 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 365 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.783 | 9 | 56 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.4E-8 | 9 | 56 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.00E-8 | 12 | 56 | No hit | No description |
PROSITE profile | PS50119 | 11.121 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.6E-7 | 53 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.97E-9 | 55 | 99 | No hit | No description |
SMART | SM00336 | 3.7E-9 | 57 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.638 | 322 | 364 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.8E-18 | 322 | 364 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MLKKENSNNW ARVCDSCHSA TCTVYCRADS AYLCAGCDAR IHTASLMASR HERVWVCEAC 60 ERAPAAFLCK ADAASLCASC DADIHSANPL ARRHHRVPIM PIPGTIYGPP AVHTITGGSM 120 MIGGTTGEGT EDDGFLSLNQ DADDTTIDEE DEDEAASWLL LNPPVKNNNK NNNYGMLFGG 180 EVVDDYLDLA EYGGDSQFND QYSVNQQQQH YSVPQKSYVE DSVVPVQNGQ RKSLILYQTP 240 QQQQSHHLNF QLGMEYDNSN TGYGYPASLS HSVSISSMDV SVVPESAQSE TSNSHPRPPK 300 GTIDLFSGPP IQIPPQLTPM DREARVLRYR EKKKNRKFEK TIRYASRKAY AETRPRIKGR 360 FAKRTDVEAE VDQMFSTQLM TDSNYGIVPS F* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16962 | 0.0 | callus| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g089540.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY490251 | 0.0 | Lycopersicon esculentum CONSTANS 1 (CO1) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233839.1 | 0.0 | CONSTANS 1 | ||||
Swissprot | Q96502 | 1e-129 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | Q2VY10 | 0.0 | Q2VY10_SOLLC; CONSTANS 1 | ||||
STRING | Solyc02g089540.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5248 | 23 | 37 | Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15840.1 | 8e-93 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g089540.2.1 |
Entrez Gene | 778253 |
Publications ? help Back to Top | |||
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