PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g089500.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 143aa    MW: 15177.4 Da    PI: 8.1652
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g089500.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-061961440
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        r+C+ + +     +C+ ++++lC+ C +  H        H++v
  Solyc02g089500.2.1 19 RVCDSCRSTACAVYCRADSSFLCAGCDTRMHAAnllasrHKRV 61
                        68******99*******************99657777778765 PP
2zf-B_box28.43.4e-0960106242
            zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                         + ++C+ +e+ ++ + C+ +   lC +C   +H+       H +vp+
  Solyc02g089500.2.1  60 RVWICEACERSPAAFLCKADAASLCTSCDADIHSAsplacrHHRVPI 106
                         5789*****************************76999999877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0541663IPR000315B-box-type zinc finger
SMARTSM003363.6E-101663IPR000315B-box-type zinc finger
CDDcd000212.13E-51963No hitNo description
PROSITE profilePS5011910.83659106IPR000315B-box-type zinc finger
PfamPF006433.5E-760106IPR000315B-box-type zinc finger
CDDcd000211.95E-762106No hitNo description
SMARTSM003362.2E-464106IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MLKNENSGVF YGSRNNWSRV CDSCRSTACA VYCRADSSFL CAGCDTRMHA ANLLASRHKR  60
VWICEACERS PAAFLCKADA ASLCTSCDAD IHSASPLACR HHRVPIMTIL GSLYGPPAVE  120
TIGSGSIMIG GPTGESRRIM GS*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves and at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g089500.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4902520.0Lycopersicon esculentum CONSTANS 2 (CO2) gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068015.15e-96LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 2
SwissprotO500553e-45COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1
TrEMBLQ2VY095e-95Q2VY09_SOLLC; CONSTANS 2
STRINGSolyc02g089500.2.11e-100(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2695022
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.11e-47CONSTANS-like 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]
  3. An C, et al.
    Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(42): p. E8930-E8939
    [PMID:28973940]
  4. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]