PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g088340.2.1
Common NameLOC100191121
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 461aa    MW: 50948.5 Da    PI: 6.6382
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g088340.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.5e-30218273359
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         DgynWrKYGqK+vk se+prsYY+Ct+ +C vkkkvers  d++++eitY+g+Hnh+
  Solyc02g088340.2.1 218 DGYNWRKYGQKKVKASECPRSYYKCTYLKCLVKKKVERSV-DGHITEITYNGRHNHD 273
                         9***************************************.***************7 PP
2WRKY105.52.8e-33386444159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Solyc02g088340.2.1 386 LDDGYKWRKYGQKVVKGTQHPRSYYRCTYPGCNVRKQVERASTDPKAVITTYEGKHNHD 444
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26210275IPR003657WRKY domain
SuperFamilySSF1182902.35E-23215275IPR003657WRKY domain
SMARTSM007741.6E-32216274IPR003657WRKY domain
PROSITE profilePS5081122.653218275IPR003657WRKY domain
PfamPF031064.0E-22218273IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-36372446IPR003657WRKY domain
SuperFamilySSF1182901.31E-29378446IPR003657WRKY domain
PROSITE profilePS5081135.645381446IPR003657WRKY domain
SMARTSM007743.9E-39386445IPR003657WRKY domain
PfamPF031062.6E-26387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGETGEASAI SFPSLTIPPR PSFESFFNMS SFSPGPMSLV SSFLSDQSPD SADCPPSFSQ  60
LLAGYEYSGD PPGCQKNSGY NQNGSVNPQL FVIPSGLSPS GFLNSPGFLS PLQSPFGMSH  120
QQALAHVTAQ AEFSSSYMQM QMQMQAQDQC SSQVAPVEAL GHELSIDPKE SSLQIKECLQ  180
SSLDNKPSDN QGKQFEQPEV SQSENKTSSG ALDKPACDGY NWRKYGQKKV KASECPRSYY  240
KCTYLKCLVK KKVERSVDGH ITEITYNGRH NHDQPTKRRK NGSALDNTDC FGVRPDISTH  300
DWTVMNSSDG SSPSRSDQVP TQMVSELLVK RECDETESYL IDVDDEGHDE PDAKRTKTAI  360
ETVASSHVTV AESKIVLQTR SEVDFLDDGY KWRKYGQKVV KGTQHPRSYY RCTYPGCNVR  420
KQVERASTDP KAVITTYEGK HNHDIPTVSV RNRGTRNKYS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35218446877Probable WRKY transcription factor 4
2lex_A1e-35218446877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.103760.0flower| fruit| leaf| root| trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g088340.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154770.0Solanum lycopersicum chromosome 2 clone C02SLm0042B19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334317.10.0WRKY transcription factor 3
TrEMBLA0A3Q7FWV50.0A0A3Q7FWV5_SOLLC; Uncharacterized protein
STRINGSolyc02g088340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-99WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]