PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g087960.2.1
Common NameLOC101253245
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 293aa    MW: 33059.8 Da    PI: 6.6648
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g087960.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd  lv  v+++G+g+W+t++ + g++R+ k+c++rw +yl
  Solyc02g087960.2.1 14 KGPWTPEEDIMLVSFVQEHGPGNWRTVPTHTGLRRCSKSCRLRWTNYL 61
                        79********************************************97 PP

2Myb_DNA-binding47.44.5e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Solyc02g087960.2.1  67 RGSFSDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                         899*******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.975965IPR017930Myb domain
SuperFamilySSF466891.41E-3011108IPR009057Homeodomain-like
SMARTSM007174.5E-151363IPR001005SANT/Myb domain
PfamPF002496.4E-171461IPR001005SANT/Myb domain
CDDcd001673.02E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.84766116IPR017930Myb domain
SMARTSM007171.7E-1566114IPR001005SANT/Myb domain
PfamPF002492.1E-1467112IPR001005SANT/Myb domain
CDDcd001671.64E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRPPCCDKT GVKKGPWTPE EDIMLVSFVQ EHGPGNWRTV PTHTGLRRCS KSCRLRWTNY  60
LRPGIKRGSF SDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLRKLE  120
TSDLYSNDGH CLSKFNSTSR GQWERTLQAD INTAKQALQN ALSLDESSPI PDIGCYPFIK  180
QEAKMSTTTY ASSAENIAKL LKQWTRSEST NNSEQSKASS STQFSCNTTN NNAMTEYSSS  240
FEPSNSDQFS QATTPEAAGK FHGESKREMD DEIQLSVMLE SWLFDENDDL LI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-28141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-271411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-271411658159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-28141164105C-Myb DNA-Binding Domain
1msf_C5e-28141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g087960.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1225440.0Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence
GenBankAC2265070.0Solanum lycopersicum chromosome 2 clone C02HBa0136C06, complete sequence
GenBankEU1612830.0Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232220.10.0myb-related protein 306-like
SwissprotP813921e-101MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A3Q7FWM20.0A0A3Q7FWM2_SOLLC; Uncharacterized protein
STRINGSolyc02g087960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-101myb domain protein 94
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]