PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g087960.2.1 | ||||||||
Common Name | LOC101253245 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 293aa MW: 33059.8 Da PI: 6.6648 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv v+++G+g+W+t++ + g++R+ k+c++rw +yl Solyc02g087960.2.1 14 KGPWTPEEDIMLVSFVQEHGPGNWRTVPTHTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Solyc02g087960.2.1 67 RGSFSDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.975 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.41E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.02E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.847 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGRPPCCDKT GVKKGPWTPE EDIMLVSFVQ EHGPGNWRTV PTHTGLRRCS KSCRLRWTNY 60 LRPGIKRGSF SDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLRKLE 120 TSDLYSNDGH CLSKFNSTSR GQWERTLQAD INTAKQALQN ALSLDESSPI PDIGCYPFIK 180 QEAKMSTTTY ASSAENIAKL LKQWTRSEST NNSEQSKASS STQFSCNTTN NNAMTEYSSS 240 FEPSNSDQFS QATTPEAAGK FHGESKREMD DEIQLSVMLE SWLFDENDDL LI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-28 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-27 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-27 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-28 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-28 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g087960.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122544 | 0.0 | Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence | |||
GenBank | AC226507 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0136C06, complete sequence | |||
GenBank | EU161283 | 0.0 | Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232220.1 | 0.0 | myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-101 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A3Q7FWM2 | 0.0 | A0A3Q7FWM2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g087960.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-101 | myb domain protein 94 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g087960.2.1 |
Entrez Gene | 101253245 |
Publications ? help Back to Top | |||
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