PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g087920.2.1 | ||||||||
Common Name | LOC101245226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 384aa MW: 43369.5 Da PI: 6.9082 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.3e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++ Solyc02g087920.2.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP 103 579***************************.89***************9888999************************************ PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfy+gra +g ktdW+mhe+rl Solyc02g087920.2.1 104 IYSSdSTKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 141 ***955666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-58 | 11 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.154 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MDDKSDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV 120 FYRGRAARGI KTDWMMHEFR LPTTNNESGP PKKFLEKNFP PNDSWAICRI FKKTNSMANR 180 ALSYAWGNPL SEVASPELFN QSANAHFVSE NVSSITETGT ALHLSNNNDL LQGASNVPSY 240 KSLNAMASRP SYLSSPSTDI SYNFMFSSPE VSGQNNRCLL DANSMFFNTS PALITDISKT 300 SESIDFDGSN QQLKMQTSIS MENDEAGLKS NRTSINDNTE WENMRSVGFP FSLAEEWKPS 360 LSWDSPPCPS EISTSFSTNK CYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-53 | 16 | 176 | 17 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00537 | DAP | Transfer from AT5G39820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g087920.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122544 | 0.0 | Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence | |||
GenBank | AC226507 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0136C06, complete sequence | |||
GenBank | EU161283 | 0.0 | Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233682.1 | 0.0 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9FIW5 | 1e-100 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 4e-99 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A3Q7FAZ8 | 0.0 | A0A3Q7FAZ8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g087920.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 1e-102 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g087920.2.1 |
Entrez Gene | 101245226 |
Publications ? help Back to Top | |||
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