PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g087840.2.1

Common Name

LOC101256052

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 310aa MW: 35289.3 Da PI: 6.574

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g087840.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.8e-18	95	148	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Solyc02g087840.2.1 95 KKRRLNMEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 148 456899***********************************************9 PP
2	HD-ZIP_I/II	130.8	5.3e-42	94	185	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++d+lk++n++L+++++eL++el Solyc02g087840.2.1 94 EKKRRLNMEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEMLKRHFDSLKTDNDALKAQNKELHSEL 184 69***************************************************************************************99 PP HD-ZIP_I/II 92 k 92 + Solyc02g087840.2.1 185 Q 185 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.6E-18	93	154	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-18	93	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.568	94	150	IPR001356	Homeobox domain
CDD	cd00086	1.65E-16	95	151	No hit	No description
Pfam	PF00046	2.4E-15	95	148	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.1E-19	97	158	IPR009057	Homeodomain-like
PRINTS	PR00031	1.9E-5	121	130	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	125	148	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.9E-5	130	146	IPR000047	Helix-turn-helix motif
CDD	cd14686	0.00598	141	185	No hit	No description
Pfam	PF02183	9.1E-15	150	191	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MISGSRGIMD FLPSTPDISL NFQDNNHHLP STSPKLFPSP SIPHQDHFNH GVPSMLMRRS 60 MSFSGVERCD NHQDLRVDDN ELSDEDGSSQ LLGEKKRRLN MEQVKALERS FEVANKLEPE 120 RKIQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYEMLK RHFDSLKTDN DALKAQNKEL 180 HSELQLLSVK KRESSGGGGI MFNLNKENEG CWSNNGSDDN NNNNSIDVNL GTRTSSGDSP 240 FYSKNVFPPE PGPVPLAQFL QTSSTPPDHL THCHKNIDPT VQNEGFCNMF TPVDDHTNFW 300 PWPEQQHFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g087840.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT012922	0.0	Lycopersicon esculentum clone 114085R, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232228.2	0.0	homeobox-leucine zipper protein ATHB-13
Swissprot	Q00466	2e-69	HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBL	A0A3Q7FAA5	0.0	A0A3Q7FAA5_SOLLC; Uncharacterized protein
STRING	Solyc02g087840.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	8e-66	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc02g087840.2.1
Entrez Gene	101256052

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]