PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g085600.1.1
Common NameLOC101251641
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 537aa    MW: 59385.4 Da    PI: 5.4884
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g085600.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.41.7e-1011755352374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      +a +++++s+++++++++++k++s++sPi+
  Solyc02g085600.1.1 175 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------SARQTRSSSSSDVIQTIKSYKILSNISPIP 259
                         678*************************999************************......788899999999****************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          fs +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++fA+el++ fe+
  Solyc02g085600.1.1 260 MFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPILRITALVPEE--YAVESRLIRENLTQFARELNIGFEI 348
                         ******************************************877666689***********66..99999******************** PP

                GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysal 267
                         ++++ +++e l+++++++ +gE++aV l+ +++r +          + +++ ++++sP+vvv+v++e  + +++ sF + +++ le+ys+l
  Solyc02g085600.1.1 349 DFVLIRTFELLSFKAIKFMEGEKTAVLLSPAIFRRV------G---SGFVNELRRISPNVVVHVDSEglMGYGAMSFRQTVIDGLEFYSTL 430
                         **********************************98......3...48*******************87788******************* PP

                GRAS 268 fdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                         ++sl +a+++  +  ++++k+E+++l ++iv+++ + g++        ++Wr+++ +aGF+pv ls++a  qa++ll +v+++g++v +++
  Solyc02g085600.1.1 431 LESLeAANIGGGNcgDWMRKIENFVLFPKIVDMIGAVGRR-----GGGGSWRDAMVDAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQ 516
                         ****88999999999**********************998.....999******************************************* PP

                GRAS 356 gslvlgWkdrpLvsvSaWr 374
                         ++++l+W+dr+Lv++SaWr
  Solyc02g085600.1.1 517 AEMLLCWHDRALVATSAWR 535
                         ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.18148515IPR005202Transcription factor GRAS
PfamPF035145.8E-99175535IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MKVPFSTNDN VSSKPLVNSN NSFTFPAATN GSNLCYEPKS VLELRRSPSP IVDKQIITTN  60
PDLSALCGGE DPLQLGDHVL SNFEDWDSLM RELGLHDDSA SLSKTNPLTH SESLTQFHNL  120
SEFSAESNQF PSPDFSFSDT NFPQQFPTVN QASFINALDL SGDIHQNWSV GFDYVDELIR  180
FAECFETNAF QLAHVILARL NQRLRSAAGK PLQRAAFYFK EALQAQLAGS ARQTRSSSSS  240
DVIQTIKSYK ILSNISPIPM FSSFTANQAV LEAVDGSMLV HVIDFDIGLG GHWASFMKEL  300
ADKAECRKAN APILRITALV PEEYAVESRL IRENLTQFAR ELNIGFEIDF VLIRTFELLS  360
FKAIKFMEGE KTAVLLSPAI FRRVGSGFVN ELRRISPNVV VHVDSEGLMG YGAMSFRQTV  420
IDGLEFYSTL LESLEAANIG GGNCGDWMRK IENFVLFPKI VDMIGAVGRR GGGGSWRDAM  480
VDAGFRPVGL SQFADFQADC LLGRVQVRGF HVAKRQAEML LCWHDRALVA TSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2718253427378Protein SCARECROW
5b3h_A3e-2718253426377Protein SCARECROW
5b3h_D3e-2718253426377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.180400.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g085600.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260010.0Solanum lycopersicum chromosome 2 clone C02HBa0116F10, complete sequence
GenBankAC2265040.0Solanum lycopersicum chromosome 2 clone C02HBa0106H06, complete sequence
GenBankAF2733330.0Lycopersicon esculentum clone BAC 19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232383.10.0scarecrow-like protein 15
SwissprotO232101e-144SCL15_ARATH; Scarecrow-like protein 15
TrEMBLQ9FYW20.0Q9FYW2_SOLLC; BAC19.14
STRINGSolyc02g085600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Representative plantOGRP10323610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-143GRAS family protein
Publications ? help Back to Top
  1. Ku HM,Vision T,Liu J,Tanksley SD
    Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny.
    Proc. Natl. Acad. Sci. U.S.A., 2000. 97(16): p. 9121-6
    [PMID:10908680]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]