PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g085340.1.1
Common NameLOC101257128
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 610aa    MW: 66532.8 Da    PI: 4.6695
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g085340.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.53.9e-1092416082373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L+ecA+  + ++ e++ + L rl+e +s++gdpm+R+ +yf+eAL +rl++   +  ++ +   t     +e + ++k+f++++P+ k
  Solyc02g085340.1.1 241 LKSLVECARLAE-SEPENVVKSLIRLRESVSQQGDPMERVGFYFLEALYNRLSS--CQAERTPSIFGT---APEELTLSYKAFNDACPYSK 325
                         578******655.57888888999******************************..222222333333...36788999************ PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         f+hltaNqaIlea+e+++r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s   g   + +l +tg+rL++fA+ l+++fef++
  Solyc02g085340.1.1 326 FAHLTANQAILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSVRISGIPSVVLGnsPSASLLATGNRLRDFAKLLDLNFEFEP 416
                         ********************************************88777*********8777889999*********************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          + + +++l+ +++rv+p+E laVn++lql++llde+    +   + L+l ksl+P +v++ e e+++n+  Fl+rf +al+yys++f+sl
  Solyc02g085340.1.1 417 -ILTPVQELNGSSFRVDPDEILAVNFMLQLYNLLDETNVGVK---TALSLAKSLNPSIVTLGEYEVNLNDVGFLQRFKNALKYYSTIFESL 503
                         .799******************************88877777...9********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvac.egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv. 359
                         + +l r+s er+ vEr +lgr+i  +v    g  rre +e +e+W+e +e aGFkpv+ls++a++qak ll +++ s  + + ++   ++ 
  Solyc02g085340.1.1 504 DPSLTRDSAERVQVERLILGRRIAGAVGLdDGGTRRECMEDKEHWKELMEGAGFKPVTLSHYAMSQAKILLWNYNySSSFGLIDSAPGFLs 594
                         ***************************7516778*****************************************9999999888777766 PP

                GRAS 360 lgWkdrpLvsvSaW 373
                         l Wkd+pL++vS+W
  Solyc02g085340.1.1 595 LAWKDNPLLTVSSW 608
                         ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.505214587IPR005202Transcription factor GRAS
PfamPF035141.3E-106241608IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQLQQ QEQQQQQQQQ FLGVNPLCLS PWTSNHQTLT  60
NSPTLGYGLT GSGFADPFQV AGGTDSAEPG FQFPNLEHHS TGFRFADFGG GPGGEFDSDE  120
WMESLIGGGD STGSSNLQSG CEAWQTSSEF TTLYGDPFPS CPNRLSIGSA PPPPPSSDLN  180
GVIFSETQKN LSPLQPQTSP WVAPSSSPPP IVQPASKESK VVSVDVQPCS SPESFSSKPL  240
LKSLVECARL AESEPENVVK SLIRLRESVS QQGDPMERVG FYFLEALYNR LSSCQAERTP  300
SIFGTAPEEL TLSYKAFNDA CPYSKFAHLT ANQAILEATE KATRIHIVDF GIVHGIQWAA  360
FLQALATRSA GKPVSVRISG IPSVVLGNSP SASLLATGNR LRDFAKLLDL NFEFEPILTP  420
VQELNGSSFR VDPDEILAVN FMLQLYNLLD ETNVGVKTAL SLAKSLNPSI VTLGEYEVNL  480
NDVGFLQRFK NALKYYSTIF ESLDPSLTRD SAERVQVERL ILGRRIAGAV GLDDGGTRRE  540
CMEDKEHWKE LMEGAGFKPV TLSHYAMSQA KILLWNYNYS SSFGLIDSAP GFLSLAWKDN  600
PLLTVSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1482376091375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.176960.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g085340.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153580.0Solanum lycopersicum chromosome 2 clone C02HBa0023N04, complete sequence
GenBankAC2154260.0Solanum lycopersicum chromosome 2 clone C02HBa0215M12, complete sequence
GenBankAC2154920.0Solanum lycopersicum chromosome 2 clone C02SLm0128E12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232402.10.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A3Q7F8N50.0A0A3Q7F8N5_SOLLC; Uncharacterized protein
STRINGSolyc02g085340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Representative plantOGRP67991519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]