PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g084680.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 353aa MW: 37882.8 Da PI: 7.0695

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g084680.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.3	4.9e-69	122	284	3	155
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.............aeaaskrkrelks 80 g++sCqdCGnqakkdC h+RCRtCCksrgf+C+thv+stWvpaakrrerqqql+++++++++++ +++++kr+re Solyc02g084680.2.1 122 GGGISCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVRSTWVPAAKRRERQQQLSTLQQQQEEEEqqqqqqqqqtlqlHRDNPKRPRE--D 210 5789*************************************************999988877744444444444444444444444..3 PP DUF702 81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 ++s+l +t++ ++ ++ le+ ++P++v s+avf+cvr+ssvdd+++++aYqtav+igGhvfkGiLydqG++++ Solyc02g084680.2.1 211 PSASSLVCTRILPSS-TSGLEVGNFPAKVTSNAVFHCVRMSSVDDADDQFAYQTAVNIGGHVFKGILYDQGPDNQ 284 566777778776654.55899999**********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-66	124	282	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.2E-27	126	168	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.7E-26	234	281	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MAALQRVMAG FFSLGGGAAA TTSQDQQQET TNNPESNWFL YRNDHHQELP TTYRGFELWQ 60 NTNSQPQIRN PINPLQDLYP TAAVGLGIGP SHSGFPSMAR PNHDPPSGGG GGSGLVMMRS 120 GGGGISCQDC GNQAKKDCPH MRCRTCCKSR GFQCQTHVRS TWVPAAKRRE RQQQLSTLQQ 180 QQEEEEQQQQ QQQQQTLQLH RDNPKRPRED PSASSLVCTR ILPSSTSGLE VGNFPAKVTS 240 NAVFHCVRMS SVDDADDQFA YQTAVNIGGH VFKGILYDQG PDNQYMGGGE SSSGGGSASH 300 QHNLIGAAGT ATSAATSGGA APEASPYLDP SLYPAPLNTF MAGTQFFPPP RS*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MAALQRVMAG FFSLGGGAAA TTSQDQQQET TNNPESNWFL YRNDHHQELP TTYRGFELWQ  60
NTNSQPQIRN PINPLQDLYP TAAVGLGIGP SHSGFPSMAR PNHDPPSGGG GGSGLVMMRS  120
GGGGISCQDC GNQAKKDCPH MRCRTCCKSR GFQCQTHVRS TWVPAAKRRE RQQQLSTLQQ  180
QQEEEEQQQQ QQQQQTLQLH RDNPKRPRED PSASSLVCTR ILPSSTSGLE VGNFPAKVTS  240
NAVFHCVRMS SVDDADDQFA YQTAVNIGGH VFKGILYDQG PDNQYMGGGE SSSGGGSASH  300
QHNLIGAAGT ATSAATSGGA APEASPYLDP SLYPAPLNTF MAGTQFFPPP RS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g084680.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU928192	1e-07	S.lycopersicum DNA sequence from clone LE_HBa-142A5, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232450.1	0.0	protein SHI RELATED SEQUENCE 1
Swissprot	K4B6C9	1e-120	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	K4BAY3	0.0	K4BAY3_SOLLC; Uncharacterized protein
STRING	Solyc02g084680.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110
Representative plant	OGRP1872	11	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	5e-74	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Solyc02g084680.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]