PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g084590.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 324aa    MW: 34786.7 Da    PI: 6.5131
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g084590.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18244278135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Solyc02g084590.2.1 244 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 278
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.7E-796322IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.78238274IPR000679Zinc finger, GATA-type
SMARTSM004013.7E-16238292IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-14240301No hitNo description
Gene3DG3DSA:3.30.50.105.6E-15242276IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-13243291No hitNo description
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
PfamPF003201.4E-16244278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTQNQTFGDD FSAAGAGQNG VSGDDFFVDD LLDFSNGFVE GEGDEEEEEG KNQGGEGISV  60
QKPCSVSIAV SPLKKTEIDD KGKVTISVNE DFASLPVSEI SVPTDDLDSL EWLSHFVEES  120
FSGYSLAYPA GKLPVEKKTG DGEIPVEEKK PCFATPVQTK ARTKRGRSSV RVWPVCSGSL  180
TESSSSSTSS SSTTTMSSSP PTGSWFLYPT PVHSAESPGK PLAKKLKKKP ASHGGNGPQQ  240
PRRCSHCGVQ KTPQWRAGPM GAKTLCNACG VRFKSGRLLP EYRPACSPTF STELHSNNHR  300
KVLEMRRKKE SEETGLTQPV QSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g084590.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232457.20.0GATA transcription factor 5-like
SwissprotQ9FH571e-74GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A3Q7F8830.0A0A3Q7F883_SOLLC; GATA transcription factor
STRINGSolyc02g084590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-69GATA transcription factor 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]