PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g082390.1.1
Common NameLOC101246019
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 282aa    MW: 31940.2 Da    PI: 9.7279
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g082390.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.43e-12118162347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+ E+ l++ + +++G g+Wk+I+r+    +t+ q+ s+ qky
  Solyc02g082390.1.1 118 PWTEGEHSLFLMGLNKFGRGDWKSISRHYVVSKTPTQVASHAQKY 162
                         7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.3842076IPR017884SANT domain
SMARTSM007171.22174IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-62374IPR009057Homeodomain-like
CDDcd001670.008352472No hitNo description
PROSITE profilePS5129414.446111167IPR017930Myb domain
SuperFamilySSF466894.81E-15113167IPR009057Homeodomain-like
SMARTSM007178.6E-7115165IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.5E-16116165IPR006447Myb domain, plants
PfamPF002491.1E-9118162IPR001005SANT/Myb domain
CDDcd001671.80E-8118163No hitNo description
Gene3DG3DSA:1.10.10.604.3E-8118162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MNWPEFLESS NPQEPTIDLS QTNRWTPEEK QVFENAFSRF NNLGSQTFFE FVASKFPHKS  60
MEEMKNLYIN LFKEAEMENP SINTNVVDNS SDKEANPNDT PPPPVQITHS RPHRRGIPWT  120
EGEHSLFLMG LNKFGRGDWK SISRHYVVSK TPTQVASHAQ KYFCRRNSKT PVDRRRPSIN  180
DIQTVSVNST RTTTTTASNN NDQVGSSSRP FRYANYTFGG PTFANNSNGN FGIYHPGEAS  240
GSNSFIMKQN NNNNNDLHRP VSPRPFHSMY LSSTKGNNPQ V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g082390.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154520.0Solanum lycopersicum chromosome 2 clone C02SLe0033D19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233758.10.0transcription factor SRM1-like
TrEMBLK4BAA90.0K4BAA9_SOLLC; Uncharacterized protein
STRINGSolyc02g082390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-32MYB family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]