PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g082040.2.1
Common NameLOC101248351
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 325aa    MW: 37149 Da    PI: 7.901
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g082040.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l++ +k +G  +W+++++  g+ R++k+c++rw +yl
  Solyc02g082040.2.1 13 RGLWSPEEDEKLIKHIKTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60
                        788*******************************************97 PP
2Myb_DNA-binding51.42.4e-1666109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg ++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Solyc02g082040.2.1  66 RGCFSEQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-26463IPR009057Homeodomain-like
PROSITE profilePS5129417.727860IPR017930Myb domain
SuperFamilySSF466892.08E-2810107IPR009057Homeodomain-like
SMARTSM007171.0E-131262IPR001005SANT/Myb domain
PfamPF002491.5E-151360IPR001005SANT/Myb domain
CDDcd001672.94E-111660No hitNo description
PROSITE profilePS5129426.12561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2464116IPR009057Homeodomain-like
SMARTSM007171.7E-1565113IPR001005SANT/Myb domain
PfamPF002498.2E-1566109IPR001005SANT/Myb domain
CDDcd001675.68E-1169108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIKHIKT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGCFS EQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGF  120
DPNTHNLLST KKKANKNNYT KSSIFTIETS LSSSSTKELV SMDMIKASLA ALSTFPNYAN  180
NMSMPQYQTS LSRLYGSVCV PTTTNIIGNS NYASTIDYKK QSTVINEKCM WSFTGFETPQ  240
HEFGNGHEEM KQEAQVQVED KSCQEEVLYK VNDLHEFNHD GRRIAENVTF DEGSDFDFEF  300
MNSELVPRGI FTNIDSIDQL AWDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31131157108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g082040.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154732e-67Solanum lycopersicum chromosome 2 clone C02SLm0020N15, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232612.10.0transcription factor MYB86-like
SwissprotQ8LPH66e-69MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A3Q7F5S70.0A0A3Q7F5S7_SOLLC; Uncharacterized protein
STRINGSolyc02g082040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-82myb domain protein 67
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]