PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g081640.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 706aa MW: 78524.4 Da PI: 4.4844

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g081640.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.3	6.4e-12	558	599	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el+++av+q+G++ ++I + ++ gRt+ q+k+++ k Solyc02g081640.2.1 558 RWSKQDTELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 599 9*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	2.7E-28	549	633	No hit	No description
PROSITE profile	PS51293	10.79	554	605	IPR017884	SANT domain
SMART	SM00717	1.9E-9	555	603	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.84E-10	557	606	IPR009057	Homeodomain-like
CDD	cd00167	1.22E-7	558	599	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-6	558	599	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MIFLLEVLQR LAGGKFQPKA KPRPVKKGPA VASSSLTSKP TGDTVATDYS EGFKSAKNSQ 60 NCDEQSPVLA EPSLGRPLAA ETLVPSVGSS LDASMVITDN NEDWKSCFEK SEGENADIYI 120 GLDSFDDLLP HSSGIDPSAA HAAGAEKRQE QLLVPVSSVD GSAHSASNLQ SDEVAAGQDP 180 LTFQASVLSV SGSCQMETDT YSFLEADILG VTTISGQSRR FQPKPKLQVY RERYDTIIPD 240 LDVGESVPCL PDSQSVHSEM DFVNSEKGHG LPAADVLDFS VRGFDIITES AHDFPVHEDY 300 VVEASLPDAD IPENHSEATS QMPEESVPQR PKNKKQKFPA SELSAISEEN GESRLLRSRR 360 KSVNASRLVD ESDEDVIGDG EYVPEHPNDS VTIGNDEEFL VENDSQGKKV QKKSKKTVTK 420 EGKRVRKSKK TAEASDQAAN KKPKKFSHST RQKRRTVDKA LLEAPMDEID YSKVPIKDLI 480 LLAEHRERLA KKDAAVSQMP PTTTDQSAGA SVSNYDEDET YASDEDGEAD DHNKSTMGED 540 TSSYFNYQTY MDKTPSTRWS KQDTELFYEA VQQFGTDLSL IQQLFPGRTR RQLKLKYKKE 600 ERQNPFRLHD VLTNRSKDHS HFERVIEHLK QIEAEELQYA DKDESIDLTG EEEMVGNQEI 660 CEEAKSEHVE EKEVETVEQD VPNPVKEYDD DEDDFMKWSQ YTSEV*

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MIFLLEVLQR LAGGKFQPKA KPRPVKKGPA VASSSLTSKP TGDTVATDYS EGFKSAKNSQ  60
NCDEQSPVLA EPSLGRPLAA ETLVPSVGSS LDASMVITDN NEDWKSCFEK SEGENADIYI  120
GLDSFDDLLP HSSGIDPSAA HAAGAEKRQE QLLVPVSSVD GSAHSASNLQ SDEVAAGQDP  180
LTFQASVLSV SGSCQMETDT YSFLEADILG VTTISGQSRR FQPKPKLQVY RERYDTIIPD  240
LDVGESVPCL PDSQSVHSEM DFVNSEKGHG LPAADVLDFS VRGFDIITES AHDFPVHEDY  300
VVEASLPDAD IPENHSEATS QMPEESVPQR PKNKKQKFPA SELSAISEEN GESRLLRSRR  360
KSVNASRLVD ESDEDVIGDG EYVPEHPNDS VTIGNDEEFL VENDSQGKKV QKKSKKTVTK  420
EGKRVRKSKK TAEASDQAAN KKPKKFSHST RQKRRTVDKA LLEAPMDEID YSKVPIKDLI  480
LLAEHRERLA KKDAAVSQMP PTTTDQSAGA SVSNYDEDET YASDEDGEAD DHNKSTMGED  540
TSSYFNYQTY MDKTPSTRWS KQDTELFYEA VQQFGTDLSL IQQLFPGRTR RQLKLKYKKE  600
ERQNPFRLHD VLTNRSKDHS HFERVIEHLK QIEAEELQYA DKDESIDLTG EEEMVGNQEI  660
CEEAKSEHVE EKEVETVEQD VPNPVKEYDD DEDDFMKWSQ YTSEV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	410	429	QKKSKKTVTKEGKRVRKSKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16274	0.0	callus\| cell culture\| flower\| fruit\| leaf\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g081640.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215368	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0044O16, complete sequence
GenBank	AC215379	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0075D08, complete sequence
GenBank	AC215479	0.0	Solanum lycopersicum chromosome 2 clone C02SLm0049G16, complete sequence
GenBank	GU048895	0.0	Solanum lycopersicum clone BAC CaCM511O09-Tomato, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010316529.1	0.0	transcription factor TFIIIB component B'' isoform X3
TrEMBL	M1BI38	0.0	M1BI38_SOLTU; Uncharacterized protein
STRING	Solyc02g081640.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5902	23	26
Representative plant	OGRP8075	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-49	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Solyc02g081640.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]