PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g081270.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 1030aa MW: 116990 Da PI: 5.4674 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.8 | 3.4e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv +yLk+k+++kk+el ++i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd Solyc02g081270.2.1 6 LPPGFRFHPTDEELVAYYLKRKINAKKIEL-DIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKD 95 79****************************.99***************6434555777********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v s +++ vg+kktLv+y+grap+g +tdWvmheyrl Solyc02g081270.2.1 96 RKVNS-QTRSVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 *****.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-62 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.827 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-30 | 7 | 133 | IPR003441 | NAC domain |
SuperFamily | SSF53807 | 7.46E-9 | 803 | 987 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1030 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKRKINA KKIELDIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKKNLNT TNGAKIGEQQ YYGNAATSDR 180 SSSVDHVYSH DGGRSCHDMM ESSHGLMPSS SSSTSMAVHG SSPINDNVCA PSEADDDKWM 240 QYLSSNEPNF TFNNSLQPIP NCGTLPFPPS KVDIALECAR LQHRFTLPQL EIQDFPQVGS 300 YADHAKIPAQ SSFIQQASQN HVINQDYSWG GNYNSSCAPN MDDDFSFLIP LNNSNQIHHH 360 GDLGSFNFME QDENVIRSID IGDFDHHDFK SDRMVENLRW IGMSNRDLEK TFLEDYKTVP 420 LENVATVHIE EHELQGENSG HSNSFITGFN ETEANNFSIG FDNFLDNDGD IDGFSNSPSF 480 EVYEKVEVNH GFFIATRQAS KTFYHQVTPS RTLKIHKNLV PLHDFPKSSI NNFVTRPWTT 540 TMRTLVGMVA ILQTFWIYFG ECLELEVKGF KLEDKKGVYE ECCLIEGVEK KIKKVHDFKW 600 DFYEQNKFLI GEKQEEGIKY CCYVEKKWPN YLTLSLDYAN AAIPTVKVGN ISKVGDSAYF 660 RIYYGQTFKV IKNTLDGKSY LLIQNNTRMA SRTKYCTSRI KSFVIPLANY SIETDYFFPV 720 SFFEVRMHSF SIILILLGLL GNLKGITSTY VASQCVLKLY QDGQVESINK TDHQQLAQYA 780 AHFIANTDEA QPCNFATFVP IGEDAPLQRA EWIKYLGVFA NMENRANQVY DAIKENYLCL 840 SKAATGRSSL KPTVSWMEYK DGVWSFTRDP YKLKFVEDAG GVNVDDSINK VTYNMSNPDD 900 LEEIHAILCT VDVVIDETYT SDPAAYNGST FLGNINLEDQ TCFAFLTNQS IWRYDKRVQN 960 SVVLDWYDGA VSQPQLVLAD IVEALYPTGN YNTTYFRNIA KGEGIISIVP EMCERDSSIP 1020 MEPTVVACQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-54 | 2 | 133 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.17412 | 0.0 | flower| leaf| trichome |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g081270.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226509 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0144P17, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010316553.1 | 0.0 | NAC domain-containing protein 86 isoform X1 | ||||
TrEMBL | A0A3Q7F664 | 0.0 | A0A3Q7F664_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g081270.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1495 | 23 | 48 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-135 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g081270.2.1 |
Publications ? help Back to Top | |||
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